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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028429 through 18771 annotations produced 1 hits



Inhibitor-2 (I-2):

Annotation Number : CG10574
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028429
Gbrowse : chr3L:9827466-9829896 (-) // 99.61 //
Probeset : 1623495_at
Accessions : protein= NP_001097564; /// NP_524013;, nucleotide= NM_001104094; /// NM_079289;
Interpro : 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from direct assay /// 0004864 // phosphoprotein pho
FlyMine data for FBgn0028429.
BioGrid reports that CG10574 interacts with CG5650 CG2096 CG9156 CG6593 CG7904 CG5650 CG8980 .
VDRC has 3 RNAi stocks for FBgn0028429 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain385 ± 94 of 4 1.70Up
Head270 ± 174 of 4 1.20None
Eye234 ± 154 of 4 1.06None
Thoracicoabdominal ganglion505 ± 214 of 4 2.30Up
Salivary gland203 ± 64 of 4 0.92None
Crop352 ± 124 of 4 1.60Up
Midgut214 ± 124 of 4 1.00None
Tubule195 ± 64 of 4 0.90Down
Hindgut314 ± 134 of 4 1.40Up
Heart180 ± 164 of 4 0.82None
Fat body318 ± 394 of 4 1.44Up
Ovary355 ± 24 of 4 1.60Up
Testis283 ± 104 of 4 1.30None
Male accessory glands229 ± 44 of 4 1.00None
Virgin spermatheca953 ± 804 of 4 4.33Up
Mated spermatheca729 ± 904 of 4 3.31Up
Adult carcass271 ± 244 of 4 1.20None
Larval CNS238 ± 194 of 4 1.08None
Larval Salivary gland206 ± 54 of 4 0.94None
Larval midgut84 ± 44 of 4 0.38Down
Larval tubule191 ± 84 of 4 0.90None
Larval hindgut163 ± 54 of 4 0.74None
Larval fat body245 ± 114 of 4 1.10None
Larval trachea139 ± 104 of 4 0.63Down
Larval carcass156 ± 94 of 4 0.71None
S2 cells (growing)260 ± 154 of 4 1.18None
Whole fly220 ± 214 of 4

Looking for FBgn0028429. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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