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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028430 through 18771 annotations produced 1 hits

Hemese (He):

Annotation Number : CG31770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028430
Gbrowse : chr2L:13972093-13972947 (-) // 100.0 //
Probeset : 1640654_at
Accessions : protein= NP_652734;, nucleotide= NM_144477;
FlyMine data for FBgn0028430.
BioGrid reports that CG31770 interacts with CG12755 .
VDRC has 3 RNAi stocks for FBgn0028430 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.80None
Head13 14 of 4 2.20Up
Eye6 13 of 4 1.06None
Thoracicoabdominal ganglion7 11 of 4 1.20None
Salivary gland10 20 of 4 1.71None
Crop4 21 of 4 0.70None
Midgut3 10 of 4 0.50None
Tubule2 00 of 4 0.30Down
Hindgut4 11 of 4 0.70None
Heart63 54 of 410.27Up
Fat body14 73 of 4 2.30None
Ovary0 00 of 4 0.10Down
Testis3 02 of 4 0.50None
Male accessory glands5 10 of 4 0.80None
Virgin spermatheca6 11 of 4 1.11None
Mated spermatheca9 12 of 4 1.50None
Adult carcass24 54 of 4 4.00Up
Larval CNS5 13 of 4 0.96None
Larval Salivary gland5 11 of 4 0.83None
Larval midgut10 14 of 4 1.71Up
Larval tubule77 144 of 412.40Up
Larval hindgut30 34 of 4 4.83Up
Larval fat body143 334 of 423.10Up
Larval trachea142 324 of 422.93Up
Larval carcass260 74 of 442.08Up
S2 cells (growing)51 34 of 4 8.31Up
Whole fly6 12 of 4

Looking for FBgn0028430. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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