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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028436 through 18771 annotations produced 1 hits



ECSIT (ECSIT):

Annotation Number : CG10610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028436
Gbrowse : chr3R:1682306-1683636 (+) // 100.0 //
Probeset : 1634592_at
Accessions : protein= NP_649602;, nucleotide= NM_141345;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016651 // oxidoreductase activity
FlyMine data for FBgn0028436.
BDGP gene expression has embryonic in situ data for ECSIT: 10 pix of staining in 4 body parts.
BioGrid reports that CG10610 interacts with CG15863 CG18259 CG7386 CG10961 .
VDRC has 3 RNAi stocks for FBgn0028436 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 14 of 4 1.40Up
Head51 ± 34 of 4 0.80None
Eye55 ± 44 of 4 0.91None
Thoracicoabdominal ganglion95 ± 34 of 4 1.60Up
Salivary gland57 ± 51 of 4 0.95None
Crop59 ± 64 of 4 1.00None
Midgut51 ± 14 of 4 0.90None
Tubule59 ± 24 of 4 1.00None
Hindgut84 ± 24 of 4 1.40Up
Heart80 ± 24 of 4 1.32Up
Fat body68 ± 114 of 4 1.12None
Ovary108 ± 24 of 4 1.80Up
Testis25 ± 14 of 4 0.40Down
Male accessory glands66 ± 24 of 4 1.10None
Virgin spermatheca57 ± 34 of 4 0.94None
Mated spermatheca50 ± 34 of 4 0.82None
Adult carcass64 ± 44 of 4 1.10None
Larval CNS82 ± 54 of 4 1.36Up
Larval Salivary gland45 ± 54 of 4 0.75None
Larval midgut58 ± 44 of 4 0.96None
Larval tubule42 ± 14 of 4 0.70Down
Larval hindgut99 ± 64 of 4 1.63Up
Larval fat body29 ± 34 of 4 0.50Down
Larval trachea77 ± 174 of 4 1.28None
Larval carcass51 ± 34 of 4 0.85None
S2 cells (growing)72 ± 14 of 4 1.20None
Whole fly60 ± 54 of 4

Looking for FBgn0028436. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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