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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028468 through 18771 annotations produced 1 hits



tetracycline resistance (rtet):

Annotation Number : CG5760
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028468
Gbrowse : chr3R:16934169-16936554 (+) // 100.0 //
Probeset : 1632404_at
Accessions : protein= NP_524429;, nucleotide= NM_079705;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0028468.
BDGP gene expression has embryonic in situ data for rtet: 9 pix of staining in 6 body parts.
Homophila reports that CG5760 is a close match (4e-12) to human gene MFSD8;MGC33302 (NP_689991), a gene associated with Ceroid lipofuscinosis, neuronal, 7, 610951 (3).
BioGrid reports that CG5760 interacts with CG9961 .
VDRC has 3 RNAi stocks for FBgn0028468 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 24 of 4 0.20Down
Head61 ± 24 of 4 0.30Down
Eye47 ± 34 of 4 0.26Down
Thoracicoabdominal ganglion43 ± 14 of 4 0.20Down
Salivary gland106 ± 24 of 4 0.58Down
Crop86 ± 04 of 4 0.50Down
Midgut274 ± 64 of 4 1.50Up
Tubule259 ± 474 of 4 1.40None
Hindgut98 ± 54 of 4 0.50Down
Heart62 ± 44 of 4 0.34Down
Fat body36 ± 34 of 4 0.20Down
Ovary293 ± 104 of 4 1.60Up
Testis13 ± 01 of 4 0.10Down
Male accessory glands63 ± 44 of 4 0.30Down
Virgin spermatheca50 ± 34 of 4 0.28Down
Mated spermatheca49 ± 24 of 4 0.27Down
Adult carcass59 ± 14 of 4 0.30Down
Larval CNS83 ± 24 of 4 0.46Down
Larval Salivary gland71 ± 54 of 4 0.39Down
Larval midgut98 ± 44 of 4 0.54Down
Larval tubule156 ± 34 of 4 0.90None
Larval hindgut245 ± 74 of 4 1.34Up
Larval fat body31 ± 44 of 4 0.20Down
Larval trachea208 ± 194 of 4 1.14None
Larval carcass311 ± 184 of 4 1.70Up
S2 cells (growing)282 ± 134 of 4 1.54Up
Whole fly183 ± 154 of 4

Looking for FBgn0028468. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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