Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028473 through 18771 annotations produced 2 hits



/// (CG8800 /// CG8801):

Annotation Number : CG8800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033408
Gbrowse : chr2R:5282900-5283585 (-) // 100.0 //
Probeset : 1624820_at
Accessions : protein= NP_610483;, nucleotide= NM_136639;
Pathway : 0005634 // nucleus // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic
FlyMine data for FBgn0033408.
VDRC has 3 RNAi stocks for FBgn0033408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head8 ± 20 of 4 0.80None
Eye4 ± 00 of 4 0.42Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.50Down
Salivary gland10 ± 20 of 4 1.01None
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule5 ± 00 of 4 0.50Down
Hindgut1 ± 00 of 4 0.20Down
Heart2 ± 10 of 4 0.30Down
Fat body11 ± 60 of 4 1.09None
Ovary1 ± 00 of 4 0.20Down
Testis84 ± 84 of 4 8.40Up
Male accessory glands8 ± 30 of 4 0.80None
Virgin spermatheca9 ± 20 of 4 0.95None
Mated spermatheca13 ± 41 of 4 1.36None
Adult carcass6 ± 20 of 4 0.60None
Larval CNS5 ± 10 of 4 0.59Down
Larval Salivary gland2 ± 10 of 4 0.28Down
Larval midgut3 ± 10 of 4 0.30Down
Larval tubule7 ± 00 of 4 0.70None
Larval hindgut5 ± 10 of 4 0.55Down
Larval fat body18 ± 21 of 4 1.80Up
Larval trachea3 ± 20 of 4 0.36Down
Larval carcass8 ± 10 of 4 0.84None
S2 cells (growing)6 ± 10 of 4 0.60None
Whole fly10 ± 10 of 4



(CG8801):

Annotation Number : CG8801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028473
Gbrowse : chr2R:5283769-5286255 (-) // 100.0 //
Probeset : 1640227_at
Accessions : protein= NP_610484;, nucleotide= NM_136640;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from sequenc
FlyMine data for FBgn0028473.
BDGP gene expression has embryonic in situ data for BcDNA:LD23830: 4 pix of staining in 1 body parts.
BioGrid reports that CG8801 interacts with CG9455 .
TRiP has 1 RNAi stocks for FBgn0028473 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain741 ± 124 of 4 0.60Down
Head1468 ± 1044 of 4 1.30None
Eye1632 ± 554 of 4 1.40Up
Thoracicoabdominal ganglion1241 ± 694 of 4 1.10None
Salivary gland1479 ± 584 of 4 1.27Up
Crop1692 ± 974 of 4 1.40Up
Midgut1388 ± 554 of 4 1.20Up
Tubule2439 ± 494 of 4 2.10Up
Hindgut1674 ± 264 of 4 1.40Up
Heart2167 ± 1514 of 4 1.85Up
Fat body2634 ± 3704 of 4 2.25Up
Ovary944 ± 194 of 4 0.80Down
Testis111 ± 104 of 4 0.10Down
Male accessory glands3490 ± 3004 of 4 3.00Up
Virgin spermatheca3150 ± 2494 of 4 2.69Up
Mated spermatheca2917 ± 1244 of 4 2.49Up
Adult carcass2033 ± 214 of 4 1.70Up
Larval CNS882 ± 854 of 4 0.75Down
Larval Salivary gland1243 ± 1594 of 4 1.06None
Larval midgut819 ± 474 of 4 0.70Down
Larval tubule1056 ± 704 of 4 0.90None
Larval hindgut1327 ± 524 of 4 1.13Up
Larval fat body962 ± 1164 of 4 0.80None
Larval trachea1396 ± 2184 of 4 1.19None
Larval carcass1345 ± 1114 of 4 1.15None
S2 cells (growing)2881 ± 354 of 4 2.46Up
Whole fly1169 ± 254 of 4

Looking for FBgn0028473. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime