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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028474 through 18771 annotations produced 1 hits



(CG4119):

Annotation Number : CG4119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028474
Gbrowse : chrX:5560126-5564586 (+) // 100.0 //
Probeset : 1632051_at
Accessions : protein= NP_572242;, nucleotide= NM_132014;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation"
FlyMine data for FBgn0028474.
BDGP gene expression has embryonic in situ data for BcDNA:LD23634: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0028474 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 ± 44 of 4 1.30Up
Head59 ± 64 of 4 0.60Down
Eye88 ± 34 of 4 0.90None
Thoracicoabdominal ganglion109 ± 24 of 4 1.10Up
Salivary gland114 ± 74 of 4 1.16None
Crop100 ± 14 of 4 1.00None
Midgut61 ± 54 of 4 0.60Down
Tubule108 ± 34 of 4 1.10Up
Hindgut77 ± 34 of 4 0.80Down
Heart57 ± 04 of 4 0.59Down
Fat body48 ± 44 of 4 0.50Down
Ovary239 ± 24 of 4 2.40Up
Testis37 ± 04 of 4 0.40Down
Male accessory glands113 ± 14 of 4 1.20Up
Virgin spermatheca70 ± 24 of 4 0.72Down
Mated spermatheca85 ± 34 of 4 0.87Down
Adult carcass55 ± 54 of 4 0.60Down
Larval CNS228 ± 104 of 4 2.33Up
Larval Salivary gland175 ± 64 of 4 1.79Up
Larval midgut53 ± 44 of 4 0.55Down
Larval tubule78 ± 34 of 4 0.80Down
Larval hindgut99 ± 44 of 4 1.01None
Larval fat body58 ± 14 of 4 0.60Down
Larval trachea130 ± 104 of 4 1.33Up
Larval carcass98 ± 44 of 4 1.00None
S2 cells (growing)174 ± 44 of 4 1.78Up
Whole fly98 ± 34 of 4

Looking for FBgn0028474. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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