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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028475 through 18771 annotations produced 1 hits



(Hrd3):

Annotation Number : CG10221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028475
Gbrowse : chr3R:19580342-19583860 (-) // 100.0 //
Probeset : 1632236_at
Accessions : protein= NP_651179;, nucleotide= NM_142922;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0028475.
BDGP gene expression has embryonic in situ data for BcDNA:LD23587: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0028475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain151 ± 24 of 4 0.90None
Head134 ± 64 of 4 0.80Down
Eye197 ± 24 of 4 1.19Up
Thoracicoabdominal ganglion153 ± 24 of 4 0.90None
Salivary gland455 ± 214 of 4 2.73Up
Crop182 ± 74 of 4 1.10None
Midgut196 ± 164 of 4 1.20None
Tubule203 ± 174 of 4 1.20Up
Hindgut153 ± 84 of 4 0.90None
Heart211 ± 44 of 4 1.27Up
Fat body198 ± 154 of 4 1.19Up
Ovary280 ± 94 of 4 1.70Up
Testis566 ± 124 of 4 3.40Up
Male accessory glands405 ± 134 of 4 2.40Up
Virgin spermatheca139 ± 54 of 4 0.84Down
Mated spermatheca164 ± 104 of 4 0.99None
Adult carcass175 ± 104 of 4 1.10None
Larval CNS170 ± 84 of 4 1.02None
Larval Salivary gland592 ± 284 of 4 3.55Up
Larval midgut218 ± 94 of 4 1.31Up
Larval tubule344 ± 74 of 4 2.10Up
Larval hindgut197 ± 44 of 4 1.18Up
Larval fat body226 ± 314 of 4 1.40None
Larval trachea184 ± 184 of 4 1.10None
Larval carcass249 ± 94 of 4 1.49Up
S2 cells (growing)458 ± 54 of 4 2.75Up
Whole fly166 ± 64 of 4

Looking for FBgn0028475. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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