Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: 16/4/2014: We have just migrated to a new server (the old one ran XP!).
Latest news: Please report unexpected behaviours to julian.dow @ glasgow. ac. uk
Latest news: Our alternative view (http://flyatlas.gla.ac.uk/flyatlas/index.html) is still available.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028480 through 18771 annotations produced 1 hits



(CG17841):

Annotation Number : CG17841
Flybase ID : FBgn0028480
Gbrowse : chrX:10262083-10277264 (+) // 100.0 //
Probeset : 1623704_at
Accessions : protein= NP_572622;, nucleotide= NM_132394;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028480.
BDGP gene expression has embryonic in situ data for BcDNA:GH12326: 16 pix of staining in 5 body parts.
BioGrid reports that CG17841 interacts with CG2674 .
TRiP has 1 RNAi stocks for FBgn0028480 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028480 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1011 154 of 4 1.60Up
Head1043 684 of 4 1.70Up
Eye784 154 of 4 1.27Up
Thoracicoabdominal ganglion1829 774 of 4 3.00Up
Salivary gland1306 1654 of 4 2.12Up
Crop1053 124 of 4 1.70Up
Midgut639 64 of 4 1.00None
Tubule321 24 of 4 0.50Down
Hindgut1076 294 of 4 1.70Up
Heart2294 1074 of 4 3.72Up
Fat body2706 3424 of 4 4.39Up
Ovary391 134 of 4 0.60Down
Testis96 84 of 4 0.20Down
Male accessory glands1517 294 of 4 2.50Up
Virgin spermatheca2263 1314 of 4 3.67Up
Mated spermatheca2122 1354 of 4 3.44Up
Adult carcass1731 954 of 4 2.80Up
Larval CNS227 224 of 4 0.37Down
Larval Salivary gland112 34 of 4 0.18Down
Larval midgut165 74 of 4 0.27Down
Larval tubule278 84 of 4 0.50Down
Larval hindgut376 194 of 4 0.61Down
Larval fat body354 194 of 4 0.60Down
Larval trachea217 144 of 4 0.35Down
Larval carcass129 84 of 4 0.21Down
S2 cells (growing)212 14 of 4 0.34Down
Whole fly616 314 of 4

Looking for FBgn0028480. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime