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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028481 through 18771 annotations produced 1 hits



(CG4341):

Annotation Number : CG4341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028481
Gbrowse : chr2L:922794-958100 (+) // 100.0 //
Probeset : 1628782_at
Accessions : protein= NP_001097048; /// NP_608558;, nucleotide= NM_001103578; /// NM_134714;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005488 // binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic ann
FlyMine data for FBgn0028481.
VDRC has 2 RNAi stocks for FBgn0028481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain719 224 of 440.40Up
Head118 14 of 4 6.70Up
Eye26 24 of 4 1.46None
Thoracicoabdominal ganglion404 74 of 422.70Up
Salivary gland1 00 of 4 0.06Down
Crop1 00 of 4 0.10Down
Midgut1 10 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut0 00 of 4 0.10Down
Heart1 00 of 4 0.08Down
Fat body3 20 of 4 0.20Down
Ovary1 10 of 4 0.10Down
Testis19 14 of 4 1.10None
Male accessory glands9 31 of 4 0.50None
Virgin spermatheca2 00 of 4 0.13Down
Mated spermatheca2 10 of 4 0.16Down
Adult carcass5 20 of 4 0.30Down
Larval CNS293 354 of 416.49Up
Larval Salivary gland2 10 of 4 0.13Down
Larval midgut0 00 of 4 0.03Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.04Down
Larval fat body4 10 of 4 0.20Down
Larval trachea0 00 of 4 0.03Down
Larval carcass4 10 of 4 0.23Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly17 24 of 4

Looking for FBgn0028481. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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