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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028482 through 18771 annotations produced 1 hits



(CG16857):

Annotation Number : CG16857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028482
Gbrowse : chr2L:4324572-4331837 (+) // 100.0 //
Probeset : 1624256_at
Accessions : protein= NP_608822;, nucleotide= NM_134978;
FlyMine data for FBgn0028482.
BDGP gene expression has embryonic in situ data for BcDNA:GH11322: 7 pix of staining in 2 body parts.
Homophila reports that CG16857 is a close match (1e-11) to human gene HSPG2;PLC;SJS;SJA;SJS1 (NP_005520), a gene associated with Dyssegmental dysplasia, Silverman-Handmaker type, 224410 (3);Schwartz-Jampel syndrome, type 1, 255800 (3).
TRiP has 1 RNAi stocks for FBgn0028482 available for purchase.
VDRC has 5 RNAi stocks for FBgn0028482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain553 ± 154 of 412.60Up
Head414 ± 244 of 4 9.40Up
Eye1339 ± 354 of 430.52Up
Thoracicoabdominal ganglion893 ± 344 of 420.30Up
Salivary gland6 ± 20 of 4 0.15Down
Crop29 ± 34 of 4 0.70Down
Midgut13 ± 10 of 4 0.30Down
Tubule7 ± 00 of 4 0.20Down
Hindgut22 ± 34 of 4 0.50Down
Heart34 ± 24 of 4 0.78None
Fat body18 ± 30 of 4 0.42Down
Ovary13 ± 14 of 4 0.30Down
Testis23 ± 14 of 4 0.50Down
Male accessory glands40 ± 33 of 4 0.90None
Virgin spermatheca7 ± 20 of 4 0.16Down
Mated spermatheca11 ± 10 of 4 0.26Down
Adult carcass61 ± 54 of 4 1.40None
Larval CNS81 ± 114 of 4 1.86Up
Larval Salivary gland5 ± 10 of 4 0.11Down
Larval midgut13 ± 30 of 4 0.30Down
Larval tubule10 ± 21 of 4 0.20Down
Larval hindgut14 ± 12 of 4 0.32Down
Larval fat body28 ± 44 of 4 0.60Down
Larval trachea20 ± 231 of 4 0.46None
Larval carcass18 ± 23 of 4 0.42Down
S2 cells (growing)8 ± 10 of 4 0.19Down
Whole fly43 ± 44 of 4

Looking for FBgn0028482. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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