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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028491 through 18771 annotations produced 2 hits



(CG2930):

Annotation Number : CG2930
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028491
Gbrowse : chrX:3766453-3774329 (+) // 100.0 //
Probeset : 1624796_at
Accessions : protein= NP_788855; /// NP_788856; /// NP_788857;, nucleotide= NM_176682; /// NM_176683; /// NM_176684;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005427 // proton-dependent oligopeptide seco
FlyMine data for FBgn0028491.
BioGrid reports that CG2930 interacts with CG5650 CG7793 CG6856 Dmel CR31838 .
VDRC has 1 RNAi stocks for FBgn0028491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head5 ± 10 of 4 0.70None
Eye1 ± 00 of 4 0.25None
Thoracicoabdominal ganglion5 ± 10 of 4 0.70None
Salivary gland8 ± 20 of 4 1.12None
Crop4 ± 10 of 4 0.60None
Midgut38 ± 03 of 4 5.00Up
Tubule10 ± 10 of 4 1.40Up
Hindgut24 ± 33 of 4 3.20Up
Heart1 ± 00 of 4 0.24None
Fat body4 ± 20 of 4 0.59None
Ovary1 ± 00 of 4 0.20None
Testis6 ± 10 of 4 0.80None
Male accessory glands5 ± 10 of 4 0.70None
Virgin spermatheca8 ± 10 of 4 1.07None
Mated spermatheca9 ± 20 of 4 1.23None
Adult carcass11 ± 40 of 4 1.50None
Larval CNS3 ± 10 of 4 0.43None
Larval Salivary gland3 ± 10 of 4 0.47None
Larval midgut34 ± 34 of 4 4.52Up
Larval tubule11 ± 10 of 4 1.50None
Larval hindgut18 ± 01 of 4 2.39Up
Larval fat body4 ± 20 of 4 0.60None
Larval trachea5 ± 20 of 4 0.73None
Larval carcass8 ± 01 of 4 1.08None
S2 cells (growing)5 ± 10 of 4 0.76None
Whole fly7 ± 20 of 4



(CG2930):

Annotation Number : CG2930
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028491
Gbrowse : chrX:3766453-3772857 (+) // 100.0 //
Probeset : 1627277_s_at
Accessions : protein= NP_788855; /// NP_788856; /// NP_788857;, nucleotide= NM_176682; /// NM_176683; /// NM_176684;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005427 // proton-dependent oligopeptide seco
FlyMine data for FBgn0028491.
BioGrid reports that CG2930 interacts with CG5650 CG7793 CG6856 Dmel CR31838 .
VDRC has 1 RNAi stocks for FBgn0028491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 24 of 4 0.10Down
Head124 ± 74 of 4 0.20Down
Eye36 ± 24 of 4 0.07Down
Thoracicoabdominal ganglion42 ± 04 of 4 0.10Down
Salivary gland43 ± 10 of 4 0.08Down
Crop301 ± 64 of 4 0.50Down
Midgut3630 ± 504 of 4 6.60Up
Tubule3230 ± 3694 of 4 5.80Up
Hindgut1169 ± 504 of 4 2.10Up
Heart50 ± 84 of 4 0.09Down
Fat body29 ± 181 of 4 0.05Down
Ovary3 ± 10 of 4 0.00Down
Testis279 ± 144 of 4 0.50Down
Male accessory glands44 ± 32 of 4 0.10Down
Virgin spermatheca509 ± 144 of 4 0.92None
Mated spermatheca793 ± 934 of 4 1.43None
Adult carcass139 ± 184 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland9 ± 20 of 4 0.02Down
Larval midgut2780 ± 1274 of 4 5.03Up
Larval tubule4467 ± 614 of 4 8.10Up
Larval hindgut838 ± 564 of 4 1.52Up
Larval fat body14 ± 40 of 4 0.00Down
Larval trachea419 ± 284 of 4 0.76None
Larval carcass132 ± 383 of 4 0.24Down
S2 cells (growing)607 ± 84 of 4 1.10None
Whole fly552 ± 444 of 4

Looking for FBgn0028491. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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