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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028494 through 18771 annotations produced 1 hits



(CG6424):

Annotation Number : CG6424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028494
Gbrowse : chr2R:13590841-13606832 (-) // 100.0 //
Probeset : 1632465_s_at
Accessions : protein= NP_001163181; /// NP_611249; /// NP_725709;, nucleotide= NM_001169710; /// NM_137405; /// NM_166246;
FlyMine data for FBgn0028494.
BioGrid reports that CG6424 interacts with CG7196 .
VDRC has 2 RNAi stocks for FBgn0028494 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2409 ± 484 of 4 9.20Up
Head1249 ± 464 of 4 4.80Up
Eye1820 ± 1054 of 4 6.93Up
Thoracicoabdominal ganglion2649 ± 1024 of 410.10Up
Salivary gland773 ± 394 of 4 2.94Up
Crop516 ± 214 of 4 2.00Up
Midgut191 ± 54 of 4 0.70Down
Tubule156 ± 64 of 4 0.60Down
Hindgut632 ± 174 of 4 2.40Up
Heart354 ± 354 of 4 1.35None
Fat body93 ± 144 of 4 0.35Down
Ovary29 ± 24 of 4 0.10Down
Testis87 ± 44 of 4 0.30Down
Male accessory glands154 ± 74 of 4 0.60Down
Virgin spermatheca83 ± 44 of 4 0.32Down
Mated spermatheca104 ± 84 of 4 0.40Down
Adult carcass451 ± 594 of 4 1.70Up
Larval CNS454 ± 534 of 4 1.73Up
Larval Salivary gland77 ± 84 of 4 0.30Down
Larval midgut191 ± 214 of 4 0.73None
Larval tubule143 ± 54 of 4 0.50Down
Larval hindgut494 ± 664 of 4 1.88Up
Larval fat body28 ± 24 of 4 0.10Down
Larval trachea116 ± 724 of 4 0.44Down
Larval carcass239 ± 214 of 4 0.91None
S2 cells (growing)61 ± 54 of 4 0.23Down
Whole fly262 ± 204 of 4

Looking for FBgn0028494. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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