FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028496 through 18771 annotations produced 2 hits

(CG30116):

Annotation Number : CG30116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028496
Gbrowse : chr2R:14345925-14385516 (-) // 100.0 //
Probeset : 1639615_s_at
Accessions : protein= NP_611337; /// NP_611338; /// NP_725798; /// NP_725799;, nucleotide= NM_137493; /// NM_137494; /// NM_166291; /// NM_166292;
Interpro : 0016505 // apoptotic protease activator activity // non-traceable author statement
FlyMine data for FBgn0028496.
BDGP gene expression has embryonic in situ data for BcDNA:GH04922: 20 pix of staining in 11 body parts.
Homophila reports that CG30116 is a close match (6e-12) to human gene BRWD3;MRX93 (NP_694984), a gene associated with Mental retardation, X-linked 93, 300659 (3).
VDRC has 1 RNAi stocks for FBgn0028496 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	155 ± 2	4 of 4	20.70	Up
Head	36 ± 4	4 of 4	4.90	Up
Eye	7 ± 1	0 of 4	1.03	None
Thoracicoabdominal ganglion	38 ± 3	4 of 4	5.10	Up
Salivary gland	19 ± 4	2 of 4	2.54	None
Crop	50 ± 2	4 of 4	6.70	Up
Midgut	7 ± 1	0 of 4	1.00	None
Tubule	13 ± 3	2 of 4	1.80	Up
Hindgut	10 ± 1	0 of 4	1.40	None
Heart	11 ± 2	1 of 4	1.47	None
Fat body	4 ± 2	0 of 4	0.58	None
Ovary	2 ± 1	0 of 4	0.30	Down
Testis	8 ± 1	1 of 4	1.10	None
Male accessory glands	10 ± 3	0 of 4	1.40	None
Virgin spermatheca	6 ± 1	0 of 4	0.88	None
Mated spermatheca	3 ± 1	0 of 4	0.46	Down
Adult carcass	16 ± 1	1 of 4	2.20	Up
Larval CNS	19 ± 6	4 of 4	2.65	Up
Larval Salivary gland	2 ± 0	0 of 4	0.26	Down
Larval midgut	3 ± 1	0 of 4	0.51	None
Larval tubule	19 ± 1	3 of 4	2.50	Up
Larval hindgut	13 ± 1	2 of 4	1.79	Up
Larval fat body	10 ± 2	1 of 4	1.40	None
Larval trachea	1 ± 2	0 of 4	0.25	Down
Larval carcass	5 ± 2	0 of 4	0.71	None
S2 cells (growing)	5 ± 1	1 of 4	0.68	None
Whole fly	7 ± 1	0 of 4

(CG30116):

Annotation Number : CG30116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028496
Gbrowse : chr2R:14347179-14385516 (-) // 100.0 //
Probeset : 1630676_at
Accessions : protein= NP_611337; /// NP_611338; /// NP_725798; /// NP_725799;, nucleotide= NM_137493; /// NM_137494; /// NM_166291; /// NM_166292;
Interpro : 0016505 // apoptotic protease activator activity // non-traceable author statement
FlyMine data for FBgn0028496.
BDGP gene expression has embryonic in situ data for BcDNA:GH04922: 20 pix of staining in 11 body parts.
Homophila reports that CG30116 is a close match (6e-12) to human gene BRWD3;MRX93 (NP_694984), a gene associated with Mental retardation, X-linked 93, 300659 (3).
VDRC has 1 RNAi stocks for FBgn0028496 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	1 of 4	0.60	None
Head	8 ± 1	0 of 4	0.60	None
Eye	5 ± 2	0 of 4	0.39	Down
Thoracicoabdominal ganglion	11 ± 0	0 of 4	0.80	None
Salivary gland	49 ± 3	4 of 4	3.63	Up
Crop	118 ± 3	4 of 4	8.70	Up
Midgut	25 ± 3	0 of 4	1.90	Up
Tubule	40 ± 4	3 of 4	3.00	Up
Hindgut	36 ± 2	0 of 4	2.70	Up
Heart	36 ± 7	2 of 4	2.70	Up
Fat body	6 ± 3	0 of 4	0.44	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	18 ± 2	4 of 4	1.40	None
Male accessory glands	50 ± 5	3 of 4	3.70	Up
Virgin spermatheca	33 ± 2	3 of 4	2.48	Up
Mated spermatheca	41 ± 5	1 of 4	3.04	Up
Adult carcass	26 ± 0	0 of 4	1.90	Up
Larval CNS	7 ± 1	0 of 4	0.53	Down
Larval Salivary gland	4 ± 1	0 of 4	0.34	Down
Larval midgut	37 ± 3	3 of 4	2.74	Up
Larval tubule	35 ± 1	1 of 4	2.60	Up
Larval hindgut	75 ± 4	4 of 4	5.52	Up
Larval fat body	4 ± 1	0 of 4	0.30	Down
Larval trachea	7 ± 1	0 of 4	0.58	Down
Larval carcass	25 ± 1	1 of 4	1.90	Up
S2 cells (growing)	3 ± 0	0 of 4	0.29	Down
Whole fly	13 ± 1	0 of 4

Looking for FBgn0028496. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720