FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028499 through 18771 annotations produced 1 hits

(CG7985):

Annotation Number : CG7985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028499
Gbrowse : chr3R:14026026-14040723 (+) // 99.77 //
Probeset : 1624568_at
Accessions : protein= NP_650689;, nucleotide= NM_142432;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0028499.
BDGP gene expression has embryonic in situ data for BcDNA:GH04120: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0028499 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	136 ± 8	4 of 4	7.10	Up
Head	32 ± 3	4 of 4	1.70	None
Eye	17 ± 1	3 of 4	0.93	None
Thoracicoabdominal ganglion	188 ± 14	4 of 4	9.80	Up
Salivary gland	11 ± 3	0 of 4	0.60	None
Crop	7 ± 2	0 of 4	0.40	Down
Midgut	2 ± 0	0 of 4	0.10	Down
Tubule	8 ± 0	0 of 4	0.40	Down
Hindgut	8 ± 2	1 of 4	0.40	Down
Heart	14 ± 0	0 of 4	0.73	None
Fat body	5 ± 3	0 of 4	0.30	Down
Ovary	28 ± 3	4 of 4	1.50	None
Testis	7 ± 1	3 of 4	0.40	Down
Male accessory glands	25 ± 4	4 of 4	1.30	None
Virgin spermatheca	21 ± 1	3 of 4	1.13	None
Mated spermatheca	28 ± 1	4 of 4	1.47	None
Adult carcass	11 ± 4	1 of 4	0.60	None
Larval CNS	67 ± 5	4 of 4	3.50	Up
Larval Salivary gland	26 ± 2	4 of 4	1.37	None
Larval midgut	5 ± 2	0 of 4	0.26	Down
Larval tubule	15 ± 1	3 of 4	0.80	None
Larval hindgut	14 ± 1	1 of 4	0.74	None
Larval fat body	7 ± 1	0 of 4	0.40	Down
Larval trachea	38 ± 5	4 of 4	1.98	Up
Larval carcass	19 ± 2	1 of 4	1.00	None
S2 cells (growing)	23 ± 1	4 of 4	1.21	None
Whole fly	19 ± 3	3 of 4

Looking for FBgn0028499. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720