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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028500 through 18771 annotations produced 1 hits



(CG9063):

Annotation Number : CG9063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028500
Gbrowse : chr3L:22250846-22255995 (-) // 100.0 //
Probeset : 1635066_at
Accessions : protein= NP_649385;, nucleotide= NM_141128;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0028500.
VDRC has 2 RNAi stocks for FBgn0028500 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 ± 74 of 4 2.10Up
Head150 ± 34 of 4 1.50Up
Eye200 ± 104 of 4 2.03Up
Thoracicoabdominal ganglion232 ± 84 of 4 2.30Up
Salivary gland227 ± 94 of 4 2.30Up
Crop176 ± 44 of 4 1.80Up
Midgut94 ± 54 of 4 1.00None
Tubule128 ± 44 of 4 1.30Up
Hindgut233 ± 74 of 4 2.40Up
Heart123 ± 24 of 4 1.25Up
Fat body114 ± 74 of 4 1.16Up
Ovary136 ± 34 of 4 1.40Up
Testis111 ± 64 of 4 1.10None
Male accessory glands110 ± 54 of 4 1.10None
Virgin spermatheca140 ± 64 of 4 1.42Up
Mated spermatheca144 ± 34 of 4 1.46Up
Adult carcass124 ± 64 of 4 1.30Up
Larval CNS100 ± 114 of 4 1.01None
Larval Salivary gland114 ± 14 of 4 1.16Up
Larval midgut78 ± 44 of 4 0.80Down
Larval tubule135 ± 34 of 4 1.40Up
Larval hindgut148 ± 24 of 4 1.50Up
Larval fat body77 ± 14 of 4 0.80Down
Larval trachea79 ± 74 of 4 0.81Down
Larval carcass100 ± 44 of 4 1.02None
S2 cells (growing)176 ± 54 of 4 1.79Up
Whole fly98 ± 34 of 4

Looking for FBgn0028500. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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