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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028504 through 18771 annotations produced 1 hits



(CG12182):

Annotation Number : CG12182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028504
Gbrowse : chr3L:2596957-2599541 (-) // 100.0 //
Probeset : 1626384_at
Accessions : protein= NP_647731;, nucleotide= NM_139474;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028504.
BioGrid reports that CG12182 interacts with CG12297 CG18349 CG7763 .
VDRC has 2 RNAi stocks for FBgn0028504 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 14 of 4 2.20Up
Head17 14 of 4 1.00None
Eye18 24 of 4 1.02None
Thoracicoabdominal ganglion34 24 of 4 1.90Up
Salivary gland25 13 of 4 1.40Up
Crop12 13 of 4 0.70Down
Midgut13 22 of 4 0.70None
Tubule7 10 of 4 0.40Down
Hindgut10 11 of 4 0.60Down
Heart8 12 of 4 0.47Down
Fat body15 53 of 4 0.88None
Ovary32 14 of 4 1.80Up
Testis22 14 of 4 1.20Up
Male accessory glands32 12 of 4 1.80Up
Virgin spermatheca13 11 of 4 0.75None
Mated spermatheca12 03 of 4 0.68Down
Adult carcass9 10 of 4 0.50Down
Larval CNS63 34 of 4 3.51Up
Larval Salivary gland24 14 of 4 1.34Up
Larval midgut12 10 of 4 0.71None
Larval tubule13 02 of 4 0.80Down
Larval hindgut14 14 of 4 0.82None
Larval fat body22 22 of 4 1.20None
Larval trachea21 62 of 4 1.19None
Larval carcass8 11 of 4 0.47Down
S2 cells (growing)54 14 of 4 3.05Up
Whole fly18 04 of 4

Looking for FBgn0028504. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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