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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028514 through 18771 annotations produced 2 hits



(CG4793):

Annotation Number : CG4793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028514
Gbrowse : chr2L:15923394-15926526 (+) // 100.0 //
Probeset : 1623603_at
Accessions : protein= NP_723941;, nucleotide= NM_165139;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity
FlyMine data for FBgn0028514.
Homophila reports that CG4793 is a close match (6e-11) to human gene PLG (NP_000292), a gene associated with Conjunctivitis, ligneous, 217090 (3);Plasminogen deficiency, types I and II (1);Plasminogen Tochigi disease (3);Thrombophilia, dysplasminogenemic (1).
VDRC has 2 RNAi stocks for FBgn0028514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.00None
Head2 00 of 4 1.30None
Eye2 10 of 4 1.71None
Thoracicoabdominal ganglion2 10 of 4 1.60None
Salivary gland6 31 of 4 3.60None
Crop1 00 of 4 0.60None
Midgut1 00 of 4 0.80None
Tubule2 00 of 4 1.50Up
Hindgut0 00 of 4 0.30None
Heart1 00 of 4 1.00None
Fat body4 20 of 4 2.46None
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.70None
Male accessory glands4 20 of 4 2.40None
Virgin spermatheca0 00 of 4 0.43None
Mated spermatheca0 00 of 4 0.26Down
Adult carcass1 00 of 4 0.70None
Larval CNS1 00 of 4 0.75None
Larval Salivary gland4 10 of 4 2.57None
Larval midgut2 10 of 4 1.46None
Larval tubule1 10 of 4 0.90None
Larval hindgut2 01 of 4 1.44None
Larval fat body0 00 of 4 0.20Down
Larval trachea1 10 of 4 1.01None
Larval carcass1 00 of 4 0.71None
S2 cells (growing)0 00 of 4 0.41None
Whole fly1 00 of 4



(CG4793):

Annotation Number : CG4793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028514
Gbrowse : chr2L:15923394-15926526 (+) // 100.0 //
Probeset : 1628178_a_at
Accessions : protein= NP_723941;, nucleotide= NM_165139;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity
FlyMine data for FBgn0028514.
Homophila reports that CG4793 is a close match (6e-11) to human gene PLG (NP_000292), a gene associated with Conjunctivitis, ligneous, 217090 (3);Plasminogen deficiency, types I and II (1);Plasminogen Tochigi disease (3);Thrombophilia, dysplasminogenemic (1).
VDRC has 2 RNAi stocks for FBgn0028514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 2.90None
Head1 00 of 4 1.10None
Eye1 00 of 4 1.20None
Thoracicoabdominal ganglion2 00 of 4 2.90None
Salivary gland3 00 of 4 3.71None
Crop2 10 of 4 2.90None
Midgut3 10 of 4 3.80None
Tubule2 00 of 4 2.50Up
Hindgut4 10 of 4 5.40None
Heart3 10 of 4 3.46None
Fat body1 00 of 4 1.37None
Ovary0 00 of 4 1.00None
Testis2 10 of 4 2.50None
Male accessory glands1 00 of 4 2.20None
Virgin spermatheca1 00 of 4 1.54None
Mated spermatheca0 00 of 4 0.57None
Adult carcass2 00 of 4 3.00None
Larval CNS1 10 of 4 2.03None
Larval Salivary gland4 10 of 4 5.26None
Larval midgut6 20 of 4 6.94None
Larval tubule12 10 of 414.40Up
Larval hindgut5 00 of 4 6.77Up
Larval fat body191 154 of 4218.50Up
Larval trachea2 20 of 4 2.91None
Larval carcass6 20 of 4 6.94None
S2 cells (growing)269 64 of 4307.66Up
Whole fly0 00 of 4

Looking for FBgn0028514. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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