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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028518 through 18771 annotations produced 1 hits



(CG18480):

Annotation Number : CG18480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028518
Gbrowse : chr2L:15630083-15632625 (+) // 100.0 //
Probeset : 1640344_at
Accessions : protein= NP_609761;, nucleotide= NM_135917;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0028518.
Homophila reports that CG18480 is a close match (4e-11) to human gene ALS;IGFALS (NP_004961), a gene associated with Acid-labile subunit, deficiency of (3).
TRiP has 1 RNAi stocks for FBgn0028518 available for purchase.
VDRC has 4 RNAi stocks for FBgn0028518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland10 ± 50 of 4 0.18Down
Crop6 ± 10 of 4 0.10Down
Midgut828 ± 144 of 414.60Up
Tubule481 ± 204 of 4 8.50Up
Hindgut136 ± 44 of 4 2.40Up
Heart2 ± 00 of 4 0.05Down
Fat body10 ± 71 of 4 0.18Down
Ovary4 ± 12 of 4 0.10Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca6 ± 31 of 4 0.12Down
Mated spermatheca8 ± 13 of 4 0.14Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS3 ± 21 of 4 0.07Down
Larval Salivary gland3 ± 10 of 4 0.06Down
Larval midgut1180 ± 34 of 420.84Up
Larval tubule932 ± 64 of 416.50Up
Larval hindgut268 ± 214 of 4 4.75Up
Larval fat body3 ± 20 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.03Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly56 ± 54 of 4

Looking for FBgn0028518. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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