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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028526 through 18771 annotations produced 1 hits


Annotation Number : CG15293
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028526
Gbrowse : chr2L:14108087-14109290 (-) // 100.0 //
Probeset : 1630844_at
Accessions : protein= NP_609702;, nucleotide= NM_135858;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028526.
BioGrid reports that CG15293 interacts with CG3722 CG8886 CG15693 CG1792 CG18067 CG32425 CG40045 CG4057 CG7763 CG8229 CG8409 .
VDRC has 2 RNAi stocks for FBgn0028526 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 84 of 4 0.20Down
Head3050 1134 of 4 3.90Up
Eye1762 3184 of 4 2.27None
Thoracicoabdominal ganglion111 134 of 4 0.10Down
Salivary gland14 51 of 4 0.02Down
Crop94 214 of 4 0.10Down
Midgut10 11 of 4 0.00Down
Tubule85 153 of 4 0.10Down
Hindgut368 204 of 4 0.50Down
Heart4634 3404 of 4 5.97Up
Fat body5157 5124 of 4 6.64Up
Ovary3 00 of 4 0.00Down
Testis4 02 of 4 0.00Down
Male accessory glands11 10 of 4 0.00Down
Virgin spermatheca4092 1864 of 4 5.27Up
Mated spermatheca2997 2294 of 4 3.86Up
Adult carcass3608 414 of 4 4.60Up
Larval CNS6 30 of 4 0.01Down
Larval Salivary gland40 74 of 4 0.05Down
Larval midgut15 03 of 4 0.02Down
Larval tubule8 11 of 4 0.00Down
Larval hindgut93 144 of 4 0.12Down
Larval fat body416 1544 of 4 0.50None
Larval trachea57 444 of 4 0.07Down
Larval carcass27 54 of 4 0.03Down
S2 cells (growing)5 10 of 4 0.01Down
Whole fly776 664 of 4

Looking for FBgn0028526. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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