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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028531 through 18771 annotations produced 1 hits



(CG15286):

Annotation Number : CG15286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028531
Gbrowse : chr2L:14338239-14340080 (+) // 100.0 //
Probeset : 1628838_at
Accessions : protein= NP_609706;, nucleotide= NM_135862;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0028531.
VDRC has 3 RNAi stocks for FBgn0028531 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye4 01 of 4 0.06Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland7 50 of 4 0.10Down
Crop5 10 of 4 0.10Down
Midgut0 00 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut4 10 of 4 0.10Down
Heart4 20 of 4 0.07Down
Fat body5 20 of 4 0.08Down
Ovary2 10 of 4 0.00Down
Testis1033 114 of 413.90Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.04Down
Mated spermatheca2 10 of 4 0.03Down
Adult carcass7 10 of 4 0.10Down
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut2 10 of 4 0.04Down
Larval tubule3 20 of 4 0.00Down
Larval hindgut2 00 of 4 0.03Down
Larval fat body106 623 of 4 1.40None
Larval trachea3 51 of 4 0.05Down
Larval carcass0 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly74 44 of 4

Looking for FBgn0028531. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime