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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028537 through 18771 annotations produced 1 hits



/// (CG31775 /// CG42586):

Annotation Number : CG31775
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028537 /// FBgn0260954
Gbrowse : chrUextra:222711-223384 (+) // 100.0 // /// chr2L:14737093-14737766 (-) // 100.0 // /// chr2L:14741164-14741837 (-) // 100.0 //
Probeset : 1634409_at
Accessions : protein= NP_001162976; /// NP_001162978; /// NP_001162979; /// NP_723882;, nucleotide= NM_001169505; /// NM_001169507; /// NM_001169508; /// NM_165091;
FlyMine data for FBgn0028537 /// FBgn0260954.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head104 364 of 4 1.40None
Eye16 23 of 4 0.23Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland8 30 of 4 0.11Down
Crop26 82 of 4 0.40Down
Midgut3 00 of 4 0.00Down
Tubule5 10 of 4 0.10Down
Hindgut7 10 of 4 0.10Down
Heart16 14 of 4 0.23Down
Fat body89 284 of 4 1.24None
Ovary0 00 of 4 0.00Down
Testis39 24 of 4 0.50None
Male accessory glands6 30 of 4 0.10Down
Virgin spermatheca10 13 of 4 0.15Down
Mated spermatheca13 03 of 4 0.19Down
Adult carcass49 104 of 4 0.70None
Larval CNS5 12 of 4 0.08Down
Larval Salivary gland1654 1644 of 422.82Up
Larval midgut16 24 of 4 0.23Down
Larval tubule359 664 of 4 5.00Up
Larval hindgut2307 4344 of 431.81Up
Larval fat body10500 11954 of 4144.80Up
Larval trachea920 13044 of 412.70None
Larval carcass1209 2824 of 416.68Up
S2 cells (growing)2 10 of 4 0.04Down
Whole fly72 124 of 4

Looking for FBgn0028537. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime