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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028538 through 18771 annotations produced 1 hits



sec71 (sec71):

Annotation Number : CG7578
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028538
Gbrowse : chr2L:13793549-13799674 (+) // 100.0 //
Probeset : 1629372_a_at
Accessions : protein= NP_609675; /// NP_723839;, nucleotide= NM_135831; /// NM_165059;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence
Interpro : 0005086 // ARF guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005086
FlyMine data for FBgn0028538.
Homophila reports that CG7578 is a close match (0) to human gene ARFGEF2;BIG2 (NP_006411), a gene associated with Periventricular heterotopia with microcephaly, 608097 (3).
TRiP has 1 RNAi stocks for FBgn0028538 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain223 64 of 4 1.50Up
Head183 54 of 4 1.30Up
Eye265 94 of 4 1.82Up
Thoracicoabdominal ganglion256 24 of 4 1.80Up
Salivary gland584 34 of 4 4.01Up
Crop181 54 of 4 1.20Up
Midgut237 44 of 4 1.60Up
Tubule319 134 of 4 2.20Up
Hindgut227 54 of 4 1.60Up
Heart177 34 of 4 1.22Up
Fat body194 44 of 4 1.33Up
Ovary200 64 of 4 1.40Up
Testis126 34 of 4 0.90None
Male accessory glands309 64 of 4 2.10Up
Virgin spermatheca202 64 of 4 1.39Up
Mated spermatheca215 144 of 4 1.48Up
Adult carcass174 04 of 4 1.20Up
Larval CNS143 54 of 4 0.98None
Larval Salivary gland651 164 of 4 4.47Up
Larval midgut288 144 of 4 1.98Up
Larval tubule277 64 of 4 1.90Up
Larval hindgut327 54 of 4 2.25Up
Larval fat body154 154 of 4 1.10None
Larval trachea280 294 of 4 1.93Up
Larval carcass205 14 of 4 1.41Up
S2 cells (growing)258 44 of 4 1.77Up
Whole fly145 64 of 4

Looking for FBgn0028538. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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