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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028540 through 18771 annotations produced 1 hits



(CG9008):

Annotation Number : CG9008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028540
Gbrowse : chr2L:13774339-13780163 (-) // 100.0 //
Probeset : 1632019_s_at
Accessions : protein= NP_609670; /// NP_723835;, nucleotide= NM_135826; /// NM_165055;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from
FlyMine data for FBgn0028540.
BDGP gene expression has embryonic in situ data for BG:DS00797.2: 14 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0028540 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain110 24 of 4 0.50Down
Head293 304 of 4 1.30None
Eye134 64 of 4 0.59Down
Thoracicoabdominal ganglion213 54 of 4 0.90None
Salivary gland92 104 of 4 0.41Down
Crop299 124 of 4 1.30Up
Midgut408 94 of 4 1.80Up
Tubule2232 3524 of 4 9.90Up
Hindgut137 154 of 4 0.60Down
Heart465 174 of 4 2.06Up
Fat body709 774 of 4 3.14Up
Ovary59 24 of 4 0.30Down
Testis431 254 of 4 1.90Up
Male accessory glands21 34 of 4 0.10Down
Virgin spermatheca1462 394 of 4 6.47Up
Mated spermatheca983 604 of 4 4.35Up
Adult carcass425 154 of 4 1.90Up
Larval CNS88 54 of 4 0.39Down
Larval Salivary gland41 44 of 4 0.18Down
Larval midgut163 154 of 4 0.72Down
Larval tubule434 214 of 4 1.90Up
Larval hindgut139 64 of 4 0.61Down
Larval fat body303 294 of 4 1.30None
Larval trachea375 504 of 4 1.66Up
Larval carcass192 214 of 4 0.85None
S2 cells (growing)26 14 of 4 0.12Down
Whole fly226 194 of 4

Looking for FBgn0028540. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime