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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028543 through 18771 annotations produced 1 hits



CG31839 (nimB2):

Annotation Number : CG31839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028543
Gbrowse : chr2L:13965005-13967022 (-) // 100.0 //
Probeset : 1635283_at
Accessions : protein= NP_723857;, nucleotide= NM_165075;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
FlyMine data for FBgn0028543.
VDRC has 1 RNAi stocks for FBgn0028543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 94 of 4 0.20Down
Head1161 424 of 4 4.50Up
Eye536 954 of 4 2.09None
Thoracicoabdominal ganglion48 14 of 4 0.20Down
Salivary gland30 70 of 4 0.12Down
Crop132 84 of 4 0.50Down
Midgut3 00 of 4 0.00Down
Tubule22 51 of 4 0.10Down
Hindgut356 134 of 4 1.40Up
Heart1918 964 of 4 7.47Up
Fat body2346 2724 of 4 9.14Up
Ovary3 10 of 4 0.00Down
Testis17 21 of 4 0.10Down
Male accessory glands3 00 of 4 0.00Down
Virgin spermatheca2482 724 of 4 9.67Up
Mated spermatheca2342 674 of 4 9.13Up
Adult carcass1283 724 of 4 5.00Up
Larval CNS17 20 of 4 0.07Down
Larval Salivary gland87 64 of 4 0.34Down
Larval midgut33 30 of 4 0.13Down
Larval tubule14 20 of 4 0.10Down
Larval hindgut373 154 of 4 1.45Up
Larval fat body2093 2024 of 4 8.20Up
Larval trachea314 824 of 4 1.23None
Larval carcass62 84 of 4 0.24Down
S2 cells (growing)15 00 of 4 0.06Down
Whole fly256 44 of 4

Looking for FBgn0028543. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime