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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028544 through 18771 annotations produced 1 hits

/// (CG16884 /// DsimCG16884):

Annotation Number : CG16884
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028544
Gbrowse : chr2L:13944755-13947474 (-) // 100.0 //
Probeset : 1635483_at
Accessions : protein= NP_609690;, nucleotide= NM_135846;
FlyMine data for FBgn0028544.
BDGP gene expression has embryonic in situ data for BG:DS00180.3: 6 pix of staining in 1 body parts.
BioGrid reports that CG16884 interacts with CG2140 CG2765 CG30147 CG3114 CG3533 CG5791 CG6779 CG7015 CG8232 CG8743 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
VDRC has 3 RNAi stocks for FBgn0028544 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head11 21 of 4 0.60None
Eye67 94 of 4 3.69Up
Thoracicoabdominal ganglion4 00 of 4 0.30Down
Salivary gland5 30 of 4 0.30Down
Crop3 00 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule4 00 of 4 0.20Down
Hindgut2 00 of 4 0.10Down
Heart24 212 of 4 1.36None
Fat body15 33 of 4 0.83None
Ovary1 00 of 4 0.10Down
Testis2 00 of 4 0.10Down
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.20Down
Mated spermatheca5 10 of 4 0.31Down
Adult carcass36 64 of 4 2.00None
Larval CNS12 62 of 4 0.67None
Larval Salivary gland4 20 of 4 0.25Down
Larval midgut4 10 of 4 0.26Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut235 634 of 412.89Up
Larval fat body8 41 of 4 0.40None
Larval trachea2406 8284 of 4131.88Up
Larval carcass4878 4154 of 4267.30Up
S2 cells (growing)1 00 of 4 0.09Down
Whole fly18 23 of 4

Looking for FBgn0028544. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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