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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028554 through 18771 annotations produced 1 hits



xl6 (xl6):

Annotation Number : CG10203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028554
Gbrowse : chr2L:6914299-6920274 (-) // 100.0 //
Probeset : 1624496_at
Accessions : protein= NP_723226;, nucleotide= NM_164718;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0028554.
VDRC has 3 RNAi stocks for FBgn0028554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain483 94 of 4 1.20Up
Head205 84 of 4 0.50Down
Eye252 184 of 4 0.62Down
Thoracicoabdominal ganglion395 104 of 4 1.00None
Salivary gland25 24 of 4 0.06Down
Crop88 44 of 4 0.20Down
Midgut79 54 of 4 0.20Down
Tubule68 74 of 4 0.20Down
Hindgut77 24 of 4 0.20Down
Heart61 24 of 4 0.15Down
Fat body83 114 of 4 0.21Down
Ovary821 84 of 4 2.00Up
Testis102 54 of 4 0.30Down
Male accessory glands38 24 of 4 0.10Down
Virgin spermatheca88 64 of 4 0.22Down
Mated spermatheca92 34 of 4 0.23Down
Adult carcass62 34 of 4 0.20Down
Larval CNS1102 1054 of 4 2.72Up
Larval Salivary gland285 164 of 4 0.70Down
Larval midgut140 64 of 4 0.35Down
Larval tubule100 54 of 4 0.20Down
Larval hindgut262 234 of 4 0.65Down
Larval fat body80 54 of 4 0.20Down
Larval trachea542 804 of 4 1.34Up
Larval carcass288 204 of 4 0.71Down
S2 cells (growing)710 144 of 4 1.75Up
Whole fly405 134 of 4

Looking for FBgn0028554. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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