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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028569 through 18771 annotations produced 1 hits



robl37BC (robl37BC):

Annotation Number : CG15171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028569
Gbrowse : chr2L:19010995-19011343 (+) // 100.0 //
Probeset : 1627081_at
Accessions : protein= NP_609931;, nucleotide= NM_136087;
Pathway : 0030286 // dynein complex // inferred from sequence or structural similarity
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0042623 // ATPase activity
FlyMine data for FBgn0028569.
VDRC has 3 RNAi stocks for FBgn0028569 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 13 of 4 0.20Down
Head8 11 of 4 0.20Down
Eye2 00 of 4 0.07Down
Thoracicoabdominal ganglion11 02 of 4 0.30Down
Salivary gland17 60 of 4 0.47Down
Crop9 11 of 4 0.30Down
Midgut24 31 of 4 0.60Down
Tubule8 10 of 4 0.20Down
Hindgut13 23 of 4 0.40Down
Heart5 10 of 4 0.15Down
Fat body15 51 of 4 0.40Down
Ovary10 22 of 4 0.30Down
Testis423 244 of 411.30Up
Male accessory glands21 22 of 4 0.60Down
Virgin spermatheca19 13 of 4 0.52Down
Mated spermatheca23 13 of 4 0.62Down
Adult carcass19 12 of 4 0.50Down
Larval CNS11 14 of 4 0.30Down
Larval Salivary gland17 20 of 4 0.46Down
Larval midgut11 30 of 4 0.31Down
Larval tubule17 22 of 4 0.50Down
Larval hindgut12 11 of 4 0.32Down
Larval fat body36 103 of 4 1.00None
Larval trachea10 42 of 4 0.27Down
Larval carcass14 22 of 4 0.40Down
S2 cells (growing)14 11 of 4 0.39Down
Whole fly37 14 of 4

Looking for FBgn0028569. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime