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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028570 through 18771 annotations produced 1 hits



robl22E (robl22E):

Annotation Number : CG10838
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028570
Gbrowse : chr2L:2290328-2290622 (-) // 100.0 //
Probeset : 1631862_at
Accessions : protein= NP_608667;, nucleotide= NM_134823;
Pathway : 0030286 // dynein complex // inferred from sequence or structural similarity
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from ele
FlyMine data for FBgn0028570.
BioGrid reports that CG10838 interacts with CG30409 CG31275 CG11981 CG12891 CG1780 .
VDRC has 2 RNAi stocks for FBgn0028570 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head6 10 of 4 0.20Down
Eye3 20 of 4 0.11Down
Thoracicoabdominal ganglion6 30 of 4 0.20Down
Salivary gland17 50 of 4 0.52Down
Crop1 00 of 4 0.00Down
Midgut3 10 of 4 0.10Down
Tubule3 10 of 4 0.10Down
Hindgut4 10 of 4 0.10Down
Heart6 11 of 4 0.20Down
Fat body5 50 of 4 0.15Down
Ovary5 10 of 4 0.20Down
Testis455 154 of 413.50Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca5 20 of 4 0.15Down
Mated spermatheca9 30 of 4 0.28Down
Adult carcass13 60 of 4 0.40None
Larval CNS1 00 of 4 0.03Down
Larval Salivary gland7 10 of 4 0.21Down
Larval midgut6 40 of 4 0.18Down
Larval tubule6 10 of 4 0.20Down
Larval hindgut2 00 of 4 0.07Down
Larval fat body52 224 of 4 1.50None
Larval trachea9 70 of 4 0.29Down
Larval carcass6 20 of 4 0.19Down
S2 cells (growing)2 00 of 4 0.08Down
Whole fly33 14 of 4

Looking for FBgn0028570. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime