FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028572 through 18771 annotations produced 1 hits

quick-to-court (qtc):

Annotation Number : CG14039
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028572
Gbrowse : chr2L:5060831-5070755 (+) // 100.0 //
Probeset : 1638464_a_at
Accessions : protein= NP_001014467; /// NP_001014468; /// NP_001014469; /// NP_523480; /// NP_723057; /// NP_723058; /// NP_723059;, nucleotide= NM_001014467; /// NM_001014468; /// NM_001014469; /// NM_078756; /// NM_164625; /// NM_164626; /// NM_164627;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028572.
BDGP gene expression has embryonic in situ data for qtc: 39 pix of staining in 14 body parts.
BioGrid reports that CG14039 interacts with CG8997 CG6998 Dmel CG32885 .
TRiP has 1 RNAi stocks for FBgn0028572 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028572 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	784 ± 16	4 of 4	7.50	Up
Head	389 ± 30	4 of 4	3.70	Up
Eye	997 ± 58	4 of 4	9.54	Up
Thoracicoabdominal ganglion	836 ± 30	4 of 4	8.00	Up
Salivary gland	2082 ± 36	4 of 4	19.91	Up
Crop	22 ± 0	3 of 4	0.20	Down
Midgut	198 ± 4	4 of 4	1.90	Up
Tubule	55 ± 4	4 of 4	0.50	Down
Hindgut	184 ± 3	4 of 4	1.80	Up
Heart	144 ± 4	4 of 4	1.38	Up
Fat body	115 ± 7	4 of 4	1.11	None
Ovary	24 ± 2	4 of 4	0.20	Down
Testis	464 ± 15	4 of 4	4.40	Up
Male accessory glands	281 ± 11	4 of 4	2.70	Up
Virgin spermatheca	206 ± 9	4 of 4	1.97	Up
Mated spermatheca	198 ± 24	4 of 4	1.90	Up
Adult carcass	77 ± 6	4 of 4	0.70	Down
Larval CNS	207 ± 32	4 of 4	1.99	Up
Larval Salivary gland	141 ± 12	4 of 4	1.35	None
Larval midgut	185 ± 13	4 of 4	1.77	Up
Larval tubule	137 ± 19	4 of 4	1.30	None
Larval hindgut	73 ± 2	4 of 4	0.70	Down
Larval fat body	215 ± 12	4 of 4	2.10	Up
Larval trachea	28 ± 19	4 of 4	0.28	Down
Larval carcass	19 ± 0	4 of 4	0.19	Down
S2 cells (growing)	6 ± 0	0 of 4	0.06	Down
Whole fly	104 ± 8	4 of 4

Looking for FBgn0028572. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720