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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028577 through 18771 annotations produced 1 hits



half-pint (pUf68):

Annotation Number : CG12085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028577
Gbrowse : chr3L:1496850-1502589 (-) // 100.0 //
Probeset : 1627729_s_at
Accessions : protein= NP_001163315; /// NP_001163316; /// NP_001163317; /// NP_001163318; /// NP_001163319; /// NP_001163320; /// NP_525123; /// NP_728610; /// NP_728611; /// NP_728612;, nucleotide= NM_001169844; /// NM_001169845; /// NM_001169846; /// NM_001169847; /// NM_001169848; /// NM_001169849; /// NM_080384; /// NM_167880; /// NM_167881; /// NM_167882;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000381 // regulation of alternative nuclear mRNA splicing
Interpro : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0028577.
BDGP gene expression has embryonic in situ data for pUf68: 9 pix of staining in 10 body parts.
BioGrid reports that CG12085 interacts with CG12304 CG17568 CG5376 CG5913 CG12645 CG13030 CG13567 CG14534 CG1681 CG17166 CG18627 CG18635 CG2151 CG31694 CG32043 CG3510 CG3731 CG3798 CG4027 CG4818 CG4916 CG5930 CG6056 CG7041 CG7548 CG7757 CG8947 CG9012 CG9427 CG9986 CG12743 .
TRiP has 2 RNAi stocks for FBgn0028577 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain825 ± 334 of 4 4.10Up
Head223 ± 104 of 4 1.10None
Eye274 ± 54 of 4 1.36Up
Thoracicoabdominal ganglion654 ± 274 of 4 3.20Up
Salivary gland328 ± 164 of 4 1.63Up
Crop242 ± 84 of 4 1.20Up
Midgut142 ± 64 of 4 0.70Down
Tubule457 ± 204 of 4 2.30Up
Hindgut260 ± 54 of 4 1.30Up
Heart177 ± 54 of 4 0.88Down
Fat body160 ± 74 of 4 0.79Down
Ovary338 ± 94 of 4 1.70Up
Testis79 ± 74 of 4 0.40Down
Male accessory glands320 ± 84 of 4 1.60Up
Virgin spermatheca165 ± 54 of 4 0.82Down
Mated spermatheca160 ± 134 of 4 0.79None
Adult carcass215 ± 194 of 4 1.10None
Larval CNS647 ± 304 of 4 3.21Up
Larval Salivary gland420 ± 234 of 4 2.08Up
Larval midgut122 ± 74 of 4 0.61Down
Larval tubule218 ± 64 of 4 1.10None
Larval hindgut205 ± 24 of 4 1.02None
Larval fat body208 ± 54 of 4 1.00None
Larval trachea254 ± 154 of 4 1.26Up
Larval carcass205 ± 104 of 4 1.02None
S2 cells (growing)550 ± 114 of 4 2.73Up
Whole fly201 ± 54 of 4

Looking for FBgn0028577. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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