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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028583 through 18771 annotations produced 1 hits



la costa /// lethal(1)9Ed (lcs /// sesB):

Annotation Number : CG12794
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028583
Gbrowse : chrX:21267753-21268326 (-) // 100.0 //
Probeset : 1641567_at
Accessions : protein= NP_511109; /// NP_523436; /// NP_727448; /// NP_727449; /// NP_727450;, nucleotide= NM_078554; /// NM_078712; /// NM_167246; /// NM_167247; /// NM_167248;
Pathway : engulfment // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from direct assay /// 000
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
FlyMine data for FBgn0028583.
BioGrid reports that CG12794 interacts with CG4035 CG5009 CG5546 CG7967 CG9632 .
TRiP has 1 RNAi stocks for FBgn0028583 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028583 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head1554 ± 5444 of 4 0.30Down
Eye506 ± 2554 of 4 0.11Down
Thoracicoabdominal ganglion3712 ± 9114 of 4 0.80None
Salivary gland20997 ± 11414 of 4 4.70Up
Crop8597 ± 5964 of 4 1.90Up
Midgut107 ± 54 of 4 0.00Down
Tubule399 ± 3910 of 4 0.10Down
Hindgut25 ± 32 of 4 0.00Down
Heart36 ± 64 of 4 0.01Down
Fat body208 ± 3352 of 4 0.05Down
Ovary3 ± 10 of 4 0.00Down
Testis6 ± 10 of 4 0.00Down
Male accessory glands12 ± 20 of 4 0.00Down
Virgin spermatheca26 ± 92 of 4 0.01Down
Mated spermatheca12 ± 11 of 4 0.00Down
Adult carcass7375 ± 6924 of 4 1.60Up
Larval CNS6 ± 20 of 4 0.00Down
Larval Salivary gland2027 ± 6124 of 4 0.45Down
Larval midgut49 ± 74 of 4 0.01Down
Larval tubule17 ± 30 of 4 0.00Down
Larval hindgut35 ± 14 of 4 0.01Down
Larval fat body13 ± 40 of 4 0.00Down
Larval trachea6 ± 71 of 4 0.00Down
Larval carcass15 ± 10 of 4 0.00Down
S2 cells (growing)33 ± 24 of 4 0.01Down
Whole fly4472 ± 2044 of 4

Looking for FBgn0028583. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime