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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028644 through 18771 annotations produced 1 hits

beaten path Ic (beat-Ic):

Annotation Number : CG4838
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028644
Gbrowse : chr2L:16000536-16041047 (+) // 100.0 //
Probeset : 1633489_at
Accessions : protein= NP_523580;, nucleotide= NM_078856;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0028644.
BDGP gene expression has embryonic in situ data for beat-Ic: 8 pix of staining in 1 body parts.
BioGrid reports that CG4838 interacts with CG4846 .
VDRC has 4 RNAi stocks for FBgn0028644 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain80 44 of 435.90Up
Head10 24 of 4 4.80Up
Eye0 00 of 4 0.19None
Thoracicoabdominal ganglion46 44 of 420.80Up
Salivary gland4 20 of 4 2.03None
Crop1 00 of 4 0.50None
Midgut0 00 of 4 0.40None
Tubule1 00 of 4 0.50Down
Hindgut1 00 of 4 0.50None
Heart0 00 of 4 0.12Down
Fat body3 21 of 4 1.69None
Ovary0 00 of 4 0.00Down
Testis0 00 of 4 0.20None
Male accessory glands11 33 of 4 5.20None
Virgin spermatheca0 00 of 4 0.36None
Mated spermatheca2 20 of 4 1.24None
Adult carcass1 00 of 4 0.50None
Larval CNS29 34 of 413.29Up
Larval Salivary gland1 00 of 4 0.71None
Larval midgut0 00 of 4 0.18None
Larval tubule1 00 of 4 0.60None
Larval hindgut0 00 of 4 0.09Down
Larval fat body2 10 of 4 1.20None
Larval trachea0 00 of 4 0.21None
Larval carcass0 00 of 4 0.08Down
S2 cells (growing)0 00 of 4 0.21None
Whole fly2 00 of 4

Looking for FBgn0028644. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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