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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028648 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L50 (mRpL50):

Annotation Number : CG8612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028648
Gbrowse : chr3L:7236173-7237032 (-) // 100.0 //
Probeset : 1640761_at
Accessions : protein= NP_648092;, nucleotide= NM_139835;
Pathway : 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0028648.
BDGP gene expression has embryonic in situ data for mRpL50: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0028648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain151 34 of 4 1.10None
Head95 44 of 4 0.70Down
Eye77 34 of 4 0.58Down
Thoracicoabdominal ganglion140 44 of 4 1.10None
Salivary gland91 53 of 4 0.69Down
Crop89 54 of 4 0.70Down
Midgut98 24 of 4 0.70Down
Tubule46 34 of 4 0.30Down
Hindgut100 14 of 4 0.80Down
Heart71 14 of 4 0.54Down
Fat body102 94 of 4 0.77Down
Ovary235 34 of 4 1.80Up
Testis102 24 of 4 0.80Down
Male accessory glands88 64 of 4 0.70Down
Virgin spermatheca74 34 of 4 0.56Down
Mated spermatheca75 54 of 4 0.57Down
Adult carcass83 24 of 4 0.60Down
Larval CNS217 64 of 4 1.64Up
Larval Salivary gland114 104 of 4 0.86None
Larval midgut71 74 of 4 0.54Down
Larval tubule60 14 of 4 0.50Down
Larval hindgut155 104 of 4 1.17None
Larval fat body75 34 of 4 0.60Down
Larval trachea97 124 of 4 0.74Down
Larval carcass115 164 of 4 0.87None
S2 cells (growing)129 44 of 4 0.98None
Whole fly132 24 of 4

Looking for FBgn0028648. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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