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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028663 through 18771 annotations produced 1 hits



VhaM9.7-2 (VhaM9.7-b):

Annotation Number : CG7625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028663
Gbrowse : chr3L:21532961-21533804 (+) // 100.0 //
Probeset : 1623653_at
Accessions : protein= NP_649327;, nucleotide= NM_141070;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0033179 // proton-transporting V-type ATPase
FlyMine data for FBgn0028663.
BDGP gene expression has embryonic in situ data for VhaM9.7-2: 12 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0028663 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain706 134 of 4 0.60Down
Head916 514 of 4 0.80Down
Eye1041 94 of 4 0.90None
Thoracicoabdominal ganglion833 154 of 4 0.70Down
Salivary gland6816 1644 of 4 5.88Up
Crop1121 454 of 4 1.00None
Midgut3437 784 of 4 3.00Up
Tubule3706 604 of 4 3.20Up
Hindgut3451 864 of 4 3.00Up
Heart1668 284 of 4 1.44Up
Fat body689 1144 of 4 0.60Down
Ovary978 204 of 4 0.80Down
Testis463 184 of 4 0.40Down
Male accessory glands770 244 of 4 0.70Down
Virgin spermatheca1123 84 of 4 0.97None
Mated spermatheca1128 454 of 4 0.97None
Adult carcass1042 124 of 4 0.90None
Larval CNS737 594 of 4 0.64Down
Larval Salivary gland2324 964 of 4 2.01Up
Larval midgut3702 1014 of 4 3.20Up
Larval tubule3032 1324 of 4 2.60Up
Larval hindgut3456 394 of 4 2.98Up
Larval fat body1414 1424 of 4 1.20None
Larval trachea2301 984 of 4 1.99Up
Larval carcass1656 604 of 4 1.43Up
S2 cells (growing)1404 534 of 4 1.21Up
Whole fly1158 554 of 4

Looking for FBgn0028663. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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