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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028683 through 18771 annotations produced 1 hits



spt4 (spt4):

Annotation Number : CG12372
Flybase ID : FBgn0028683
Gbrowse : chr2R:8521121-8521677 (+) // 99.08 //
Probeset : 1627131_at
Accessions : protein= NP_610802;, nucleotide= NM_136958;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006368 // RNA elongation from RNA polymerase II promoter // i
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0028683.
BioGrid reports that CG12372 interacts with CG7997 Dmel CG34380 .
TRiP has 2 RNAi stocks for FBgn0028683 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028683 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain186 24 of 4 0.70Down
Head145 54 of 4 0.60Down
Eye141 54 of 4 0.56Down
Thoracicoabdominal ganglion208 64 of 4 0.80Down
Salivary gland571 84 of 4 2.25Up
Crop199 84 of 4 0.80Down
Midgut164 54 of 4 0.60Down
Tubule112 64 of 4 0.40Down
Hindgut138 44 of 4 0.50Down
Heart131 64 of 4 0.52Down
Fat body123 164 of 4 0.49Down
Ovary527 84 of 4 2.10Up
Testis128 54 of 4 0.50Down
Male accessory glands409 184 of 4 1.60Up
Virgin spermatheca196 84 of 4 0.78Down
Mated spermatheca261 94 of 4 1.03None
Adult carcass122 64 of 4 0.50Down
Larval CNS520 214 of 4 2.05Up
Larval Salivary gland854 204 of 4 3.37Up
Larval midgut138 34 of 4 0.55Down
Larval tubule128 34 of 4 0.50Down
Larval hindgut155 44 of 4 0.61Down
Larval fat body205 94 of 4 0.80Down
Larval trachea271 424 of 4 1.07None
Larval carcass205 94 of 4 0.81Down
S2 cells (growing)218 24 of 4 0.86None
Whole fly253 134 of 4

Looking for FBgn0028683. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime