FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028687 through 18771 annotations produced 1 hits

chr2R:3539944-3541453 (-) // 99.74 // (AAA ATPase):

Annotation Number : CG1341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630925_at
Accessions : protein= , nucleotide= NP_477473;
Pathway : 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from sequence or structural
Interpro : "0000502 // proteasome complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electron
FlyMine data for full length.
Homophila reports that CG1341 is a close match (1e-24) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
BioGrid reports that CG1341 interacts with CG3173 CG18271 CG4167 CG9060 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	526 ± 15	4 of 4	0.60	Down
Head	584 ± 14	4 of 4	0.70	Down
Eye	646 ± 23	4 of 4	0.77	Down
Thoracicoabdominal ganglion	547 ± 21	4 of 4	0.70	Down
Salivary gland	812 ± 19	4 of 4	0.97	None
Crop	956 ± 23	4 of 4	1.10	Up
Midgut	809 ± 8	4 of 4	1.00	None
Tubule	1142 ± 51	4 of 4	1.40	Up
Hindgut	691 ± 7	4 of 4	0.80	Down
Heart	1509 ± 47	4 of 4	1.80	Up
Fat body	1263 ± 38	4 of 4	1.51	Up
Ovary	1139 ± 18	4 of 4	1.40	Up
Testis	619 ± 16	4 of 4	0.70	Down
Male accessory glands	587 ± 24	4 of 4	0.70	Down
Virgin spermatheca	1393 ± 41	4 of 4	1.66	Up
Mated spermatheca	1336 ± 55	4 of 4	1.60	Up
Adult carcass	1016 ± 21	4 of 4	1.20	Up
Larval CNS	1009 ± 45	4 of 4	1.21	Up
Larval Salivary gland	1521 ± 71	4 of 4	1.82	Up
Larval midgut	1524 ± 126	4 of 4	1.82	Up
Larval tubule	2442 ± 50	4 of 4	2.90	Up
Larval hindgut	1311 ± 92	4 of 4	1.57	Up
Larval fat body	1318 ± 137	4 of 4	1.60	Up
Larval trachea	1251 ± 83	4 of 4	1.50	Up
Larval carcass	1811 ± 169	4 of 4	2.16	Up
S2 cells (growing)	1046 ± 23	4 of 4	1.25	Up
Whole fly	836 ± 25	4 of 4

Looking for FBgn0028687. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720