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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028691 through 18771 annotations produced 1 hits



chr3R:19557224-19559184 (-) // 100.0 // (Nobody):

Annotation Number : CG10230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626488_s_at
Accessions : protein= , nucleotide= NP_651177; /// NP_732899;
Pathway : 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from sequence or structural
Interpro : "0000502 // proteasome complex // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // i
FlyMine data for full length.
BioGrid reports that CG10230 interacts with CG1100 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain239 24 of 4 0.50Down
Head288 84 of 4 0.60Down
Eye344 134 of 4 0.76Down
Thoracicoabdominal ganglion239 64 of 4 0.50Down
Salivary gland383 84 of 4 0.84Down
Crop607 54 of 4 1.30Up
Midgut454 84 of 4 1.00None
Tubule584 244 of 4 1.30Up
Hindgut366 124 of 4 0.80Down
Heart841 204 of 4 1.85Up
Fat body826 344 of 4 1.81Up
Ovary742 94 of 4 1.60Up
Testis511 104 of 4 1.10Up
Male accessory glands361 134 of 4 0.80Down
Virgin spermatheca379 124 of 4 0.83Down
Mated spermatheca380 394 of 4 0.83None
Adult carcass614 104 of 4 1.30Up
Larval CNS677 224 of 4 1.49Up
Larval Salivary gland524 354 of 4 1.15None
Larval midgut546 524 of 4 1.20None
Larval tubule1584 344 of 4 3.50Up
Larval hindgut719 444 of 4 1.58Up
Larval fat body887 734 of 4 1.90Up
Larval trachea559 474 of 4 1.23Up
Larval carcass1353 1234 of 4 2.97Up
S2 cells (growing)504 84 of 4 1.11Up
Whole fly455 154 of 4

Looking for FBgn0028691. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime