FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028691 through 18771 annotations produced 1 hits

chr3R:19557224-19559184 (-) // 100.0 // (Nobody):

Annotation Number : CG10230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626488_s_at
Accessions : protein= , nucleotide= NP_651177; /// NP_732899;
Pathway : 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from sequence or structural
Interpro : "0000502 // proteasome complex // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // i
FlyMine data for full length.
BioGrid reports that CG10230 interacts with CG1100 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	239 ± 2	4 of 4	0.50	Down
Head	288 ± 8	4 of 4	0.60	Down
Eye	344 ± 13	4 of 4	0.76	Down
Thoracicoabdominal ganglion	239 ± 6	4 of 4	0.50	Down
Salivary gland	383 ± 8	4 of 4	0.84	Down
Crop	607 ± 5	4 of 4	1.30	Up
Midgut	454 ± 8	4 of 4	1.00	None
Tubule	584 ± 24	4 of 4	1.30	Up
Hindgut	366 ± 12	4 of 4	0.80	Down
Heart	841 ± 20	4 of 4	1.85	Up
Fat body	826 ± 34	4 of 4	1.81	Up
Ovary	742 ± 9	4 of 4	1.60	Up
Testis	511 ± 10	4 of 4	1.10	Up
Male accessory glands	361 ± 13	4 of 4	0.80	Down
Virgin spermatheca	379 ± 12	4 of 4	0.83	Down
Mated spermatheca	380 ± 39	4 of 4	0.83	None
Adult carcass	614 ± 10	4 of 4	1.30	Up
Larval CNS	677 ± 22	4 of 4	1.49	Up
Larval Salivary gland	524 ± 35	4 of 4	1.15	None
Larval midgut	546 ± 52	4 of 4	1.20	None
Larval tubule	1584 ± 34	4 of 4	3.50	Up
Larval hindgut	719 ± 44	4 of 4	1.58	Up
Larval fat body	887 ± 73	4 of 4	1.90	Up
Larval trachea	559 ± 47	4 of 4	1.23	Up
Larval carcass	1353 ± 123	4 of 4	2.97	Up
S2 cells (growing)	504 ± 8	4 of 4	1.11	Up
Whole fly	455 ± 15	4 of 4

Looking for FBgn0028691. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720