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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028692 through 18771 annotations produced 1 hits



chr3R:24979184-24982981 (+) // 100.0 // (Rpn2):

Annotation Number : CG11888
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638876_at
Accessions : protein= , nucleotide= NP_651677;
Pathway : 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from sequence or structural
Interpro : "0000502 // proteasome complex // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // i
FlyMine data for full length.
BioGrid reports that CG11888 interacts with CG12114 CG13349 CG14612 CG16935 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain264 ± 44 of 4 0.50Down
Head354 ± 114 of 4 0.60Down
Eye350 ± 74 of 4 0.62Down
Thoracicoabdominal ganglion313 ± 54 of 4 0.60Down
Salivary gland435 ± 74 of 4 0.77Down
Crop625 ± 154 of 4 1.10Up
Midgut360 ± 144 of 4 0.60Down
Tubule538 ± 484 of 4 1.00None
Hindgut453 ± 104 of 4 0.80Down
Heart1145 ± 494 of 4 2.03Up
Fat body913 ± 814 of 4 1.62Up
Ovary902 ± 204 of 4 1.60Up
Testis593 ± 74 of 4 1.10None
Male accessory glands474 ± 204 of 4 0.80Down
Virgin spermatheca814 ± 274 of 4 1.45Up
Mated spermatheca745 ± 454 of 4 1.32Up
Adult carcass777 ± 344 of 4 1.40Up
Larval CNS836 ± 464 of 4 1.48Up
Larval Salivary gland1317 ± 694 of 4 2.34Up
Larval midgut796 ± 824 of 4 1.41None
Larval tubule1926 ± 284 of 4 3.40Up
Larval hindgut1103 ± 834 of 4 1.96Up
Larval fat body882 ± 534 of 4 1.60Up
Larval trachea915 ± 1224 of 4 1.63Up
Larval carcass1961 ± 2004 of 4 3.48Up
S2 cells (growing)703 ± 144 of 4 1.25Up
Whole fly563 ± 164 of 4

Looking for FBgn0028692. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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