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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028697 through 18771 annotations produced 1 hits



ribosomal L15 (RpL15):

Annotation Number : CG17420
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028697
Gbrowse : chr3LHet:2397791-2398994 (+) // 99.18 //
Probeset : 1627308_s_at
Accessions : protein= NP_001015155; /// NP_001015156; /// NP_001104429; /// NP_001104430;, nucleotide= NM_001015155; /// NM_001015156; /// NM_001110959; /// NM_001110960;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0028697.
BioGrid reports that CG17420 interacts with CG4213 CG4617 CG4963 CG5514 CG5711 CG6225 CG6667 CG7011 CG7146 CG7285 CG8155 CG8603 CG31094 .
VDRC has 1 RNAi stocks for FBgn0028697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3653 584 of 4 0.80None
Head5100 2384 of 4 1.10None
Eye7277 834 of 4 1.63Up
Thoracicoabdominal ganglion4943 1334 of 4 1.10None
Salivary gland13190 6074 of 4 2.95Up
Crop6234 3734 of 4 1.40Up
Midgut5832 1154 of 4 1.30Up
Tubule6910 1544 of 4 1.50Up
Hindgut5509 1684 of 4 1.20Up
Heart7213 5444 of 4 1.62Up
Fat body6002 8184 of 4 1.34Up
Ovary3622 904 of 4 0.80None
Testis1745 264 of 4 0.40Down
Male accessory glands9625 2434 of 4 2.20Up
Virgin spermatheca5417 1974 of 4 1.21Up
Mated spermatheca5937 1604 of 4 1.33Up
Adult carcass6327 2944 of 4 1.40Up
Larval CNS2919 1864 of 4 0.65Down
Larval Salivary gland8011 3844 of 4 1.79Up
Larval midgut5576 1364 of 4 1.25Up
Larval tubule5759 1164 of 4 1.30Up
Larval hindgut4761 654 of 4 1.07None
Larval fat body8099 9554 of 4 1.80Up
Larval trachea6170 2974 of 4 1.38Up
Larval carcass5000 3644 of 4 1.12None
S2 cells (growing)4718 764 of 4 1.06None
Whole fly4466 3074 of 4

Looking for FBgn0028697. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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