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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028699 through 18771 annotations produced 1 hits

Rh50 (Rh50):

Annotation Number : CG7499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028699
Gbrowse : chr3L:4910385-4919044 (+) // 100.0 //
Probeset : 1624322_at
Accessions : protein= NP_647940;, nucleotide= NM_139683;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0008519 // ammonium transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0028699.
BDGP gene expression has embryonic in situ data for Rh50: 2 pix of staining in 1 body parts.
Homophila reports that CG7499 is a close match (2e-14) to human gene RHCE (NP_619523), a gene associated with Rh-null disease, amorph type (3);[Blood group, Rhesus] (3).
VDRC has 2 RNAi stocks for FBgn0028699 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain721 174 of 412.30Up
Head259 224 of 4 4.40Up
Eye28 24 of 4 0.48Down
Thoracicoabdominal ganglion1477 314 of 425.10Up
Salivary gland34 32 of 4 0.58Down
Crop31 04 of 4 0.50Down
Midgut9 31 of 4 0.20Down
Tubule102 114 of 4 1.80Up
Hindgut964 474 of 416.40Up
Heart101 44 of 4 1.72Up
Fat body39 34 of 4 0.68Down
Ovary8 10 of 4 0.10Down
Testis12 04 of 4 0.20Down
Male accessory glands62 54 of 4 1.10None
Virgin spermatheca45 24 of 4 0.77Down
Mated spermatheca55 54 of 4 0.94None
Adult carcass209 104 of 4 3.60Up
Larval CNS75 104 of 4 1.29Up
Larval Salivary gland17 42 of 4 0.29Down
Larval midgut13 32 of 4 0.23Down
Larval tubule9 00 of 4 0.20Down
Larval hindgut1514 804 of 425.78Up
Larval fat body7 10 of 4 0.10Down
Larval trachea20 33 of 4 0.34Down
Larval carcass57 24 of 4 0.99None
S2 cells (growing)7 10 of 4 0.13Down
Whole fly58 24 of 4

Looking for FBgn0028699. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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