Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028704 through 18771 annotations produced 1 hits



chr2L:9717522-9746483 (-) // 100.0 // (Nckx30C):

Annotation Number : CG18660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630874_s_at
Accessions : protein= , nucleotide= NP_723482; /// NP_723483;
Pathway : 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic ann
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from direct a
FlyMine data for full length.
Homophila reports that CG18660 is a close match (6e-37) to human gene NCKX5;SHEP4;SLC24A5 (NP_995322), a gene associated with [Skin/hair/eye pigmentation 4, fair/dark skin], 113750 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain323 ± 64 of 415.70Up
Head83 ± 144 of 4 4.10Up
Eye28 ± 44 of 4 1.39None
Thoracicoabdominal ganglion335 ± 424 of 416.30Up
Salivary gland22 ± 42 of 4 1.10None
Crop9 ± 00 of 4 0.50Down
Midgut5 ± 10 of 4 0.30Down
Tubule9 ± 11 of 4 0.50Down
Hindgut10 ± 13 of 4 0.50Down
Heart5 ± 00 of 4 0.26Down
Fat body9 ± 60 of 4 0.46Down
Ovary7 ± 01 of 4 0.40Down
Testis23 ± 24 of 4 1.10None
Male accessory glands11 ± 32 of 4 0.50None
Virgin spermatheca2 ± 00 of 4 0.13Down
Mated spermatheca4 ± 10 of 4 0.24Down
Adult carcass24 ± 34 of 4 1.20None
Larval CNS71 ± 244 of 4 3.47Up
Larval Salivary gland13 ± 11 of 4 0.64Down
Larval midgut8 ± 11 of 4 0.40Down
Larval tubule8 ± 01 of 4 0.40Down
Larval hindgut6 ± 21 of 4 0.32Down
Larval fat body14 ± 21 of 4 0.70None
Larval trachea6 ± 10 of 4 0.31Down
Larval carcass2 ± 00 of 4 0.12Down
S2 cells (growing)7 ± 10 of 4 0.34Down
Whole fly20 ± 04 of 4

Looking for FBgn0028704. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime