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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028707 through 18771 annotations produced 1 hits



DNA(5-cytosine) methyltransferase (Mt2):

Annotation Number : CG10692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028707
Gbrowse : chr2L:12096589-12097694 (+) // 100.0 //
Probeset : 1636427_a_at
Accessions : protein= NP_001036355; /// NP_477475;, nucleotide= NM_001042890; /// NM_058127;
Pathway : 0000790 // nuclear chromatin // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003886 // DNA (cytosine-5-)-methyltransferase activit
FlyMine data for FBgn0028707.
TRiP has 1 RNAi stocks for FBgn0028707 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 04 of 4 0.50Down
Head14 ± 13 of 4 0.60Down
Eye9 ± 30 of 4 0.39Down
Thoracicoabdominal ganglion15 ± 13 of 4 0.60Down
Salivary gland24 ± 31 of 4 1.00None
Crop36 ± 24 of 4 1.50Up
Midgut16 ± 12 of 4 0.70Down
Tubule23 ± 33 of 4 1.00None
Hindgut17 ± 24 of 4 0.70Down
Heart13 ± 30 of 4 0.52Down
Fat body26 ± 13 of 4 1.08None
Ovary19 ± 14 of 4 0.80None
Testis8 ± 00 of 4 0.30Down
Male accessory glands22 ± 31 of 4 0.90None
Virgin spermatheca30 ± 24 of 4 1.21None
Mated spermatheca35 ± 14 of 4 1.45Up
Adult carcass18 ± 21 of 4 0.70None
Larval CNS32 ± 54 of 4 1.31None
Larval Salivary gland34 ± 44 of 4 1.39None
Larval midgut17 ± 31 of 4 0.70None
Larval tubule11 ± 21 of 4 0.40Down
Larval hindgut24 ± 24 of 4 0.99None
Larval fat body8 ± 20 of 4 0.30Down
Larval trachea41 ± 124 of 4 1.67None
Larval carcass16 ± 13 of 4 0.66Down
S2 cells (growing)28 ± 24 of 4 1.14None
Whole fly24 ± 14 of 4

Looking for FBgn0028707. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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