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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028708 through 18771 annotations produced 1 hits



Mst85C (Mst85C):

Annotation Number : CG11993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028708
Gbrowse : chr3R:4876545-4877953 (+) // 99.7 //
Probeset : 1640748_at
Accessions : protein= NP_477476;, nucleotide= NM_058128;
FlyMine data for FBgn0028708.
VDRC has 1 RNAi stocks for FBgn0028708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 ± 14 of 4 0.90Down
Head93 ± 44 of 4 0.60Down
Eye171 ± 44 of 4 1.06None
Thoracicoabdominal ganglion121 ± 54 of 4 0.80Down
Salivary gland98 ± 74 of 4 0.61Down
Crop162 ± 74 of 4 1.00None
Midgut61 ± 24 of 4 0.40Down
Tubule88 ± 34 of 4 0.50Down
Hindgut94 ± 54 of 4 0.60Down
Heart121 ± 34 of 4 0.76Down
Fat body118 ± 44 of 4 0.73Down
Ovary435 ± 104 of 4 2.70Up
Testis23 ± 14 of 4 0.10Down
Male accessory glands109 ± 44 of 4 0.70Down
Virgin spermatheca149 ± 34 of 4 0.93None
Mated spermatheca140 ± 44 of 4 0.87Down
Adult carcass79 ± 54 of 4 0.50Down
Larval CNS250 ± 134 of 4 1.55Up
Larval Salivary gland144 ± 34 of 4 0.89Down
Larval midgut69 ± 34 of 4 0.43Down
Larval tubule181 ± 104 of 4 1.10None
Larval hindgut125 ± 44 of 4 0.78Down
Larval fat body184 ± 184 of 4 1.10None
Larval trachea217 ± 154 of 4 1.35Up
Larval carcass129 ± 94 of 4 0.80Down
S2 cells (growing)161 ± 34 of 4 1.00None
Whole fly161 ± 54 of 4

Looking for FBgn0028708. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime