FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028717 through 18771 annotations produced 1 hits

Lnk (Lnk):

Annotation Number : CG17367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028717
Gbrowse : chr3R:21714264-21718999 (+) // 100.0 //
Probeset : 1625898_s_at
Accessions : protein= NP_651438; /// NP_733125; /// NP_733126;, nucleotide= NM_143181; /// NM_170246; /// NM_170247;
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004871 // signal transducer activity /
FlyMine data for FBgn0028717.
Homophila reports that CG17367 is a close match (4e-33) to human gene CELIAC13;LNK;SH2B3 (NP_005466), a gene associated with {Celiac disease, susceptiblity to, 13}, 612011 (3);{Diabetes mellitus, insulin-dependent, susceptibility to}, 222100 (3).
BioGrid reports that CG17367 interacts with CG1890 .
VDRC has 2 RNAi stocks for FBgn0028717 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	283 ± 8	4 of 4	2.20	Up
Head	141 ± 5	4 of 4	1.10	None
Eye	172 ± 12	4 of 4	1.31	Up
Thoracicoabdominal ganglion	294 ± 5	4 of 4	2.20	Up
Salivary gland	287 ± 10	4 of 4	2.19	Up
Crop	135 ± 5	4 of 4	1.00	None
Midgut	116 ± 5	4 of 4	0.90	None
Tubule	125 ± 6	4 of 4	1.00	None
Hindgut	128 ± 2	4 of 4	1.00	None
Heart	102 ± 9	4 of 4	0.78	Down
Fat body	127 ± 14	4 of 4	0.97	None
Ovary	328 ± 5	4 of 4	2.50	Up
Testis	46 ± 1	4 of 4	0.40	Down
Male accessory glands	113 ± 3	4 of 4	0.90	Down
Virgin spermatheca	116 ± 6	4 of 4	0.89	None
Mated spermatheca	132 ± 4	4 of 4	1.01	None
Adult carcass	126 ± 3	4 of 4	1.00	None
Larval CNS	226 ± 17	4 of 4	1.72	Up
Larval Salivary gland	111 ± 7	4 of 4	0.85	None
Larval midgut	135 ± 9	4 of 4	1.03	None
Larval tubule	126 ± 7	4 of 4	1.00	None
Larval hindgut	126 ± 3	4 of 4	0.96	None
Larval fat body	118 ± 7	4 of 4	0.90	None
Larval trachea	109 ± 8	4 of 4	0.83	Down
Larval carcass	118 ± 13	4 of 4	0.90	None
S2 cells (growing)	144 ± 2	4 of 4	1.10	None
Whole fly	131 ± 4	4 of 4

Looking for FBgn0028717. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720