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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028734 through 18771 annotations produced 2 hits



Fragile X (Fmr1):

Annotation Number : CG6203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028734
Gbrowse : chr3R:5929821-5935844 (-) // 100.0 //
Probeset : 1632612_s_at
Accessions : protein= NP_001163580; /// NP_611645; /// NP_731443; /// NP_731444; /// NP_731445; /// NP_731446;, nucleotide= NM_001170109; /// NM_137801; /// NM_169324; /// NM_169325; /// NM_169326; /// NM_169327;
Pathway : embryonic // inferred from mutant phenotype /// 0045475 // locomotor rhythm // inferred from mutant phenotype /// 00481
Interpro : sleep // inferred from mutant phenotype /// 0050807 // regulation of synapse organization // inferred from genetic inte
FlyMine data for FBgn0028734.
BDGP gene expression has embryonic in situ data for Fmr1: 4 pix of staining in 1 body parts.
Homophila reports that CG6203 is a close match (1e-68) to human gene FMR1;FRAXA (NP_002015), a gene associated with Fragile X syndrome, 300624 (3);Fragile X tremor/ataxia syndrome, 300623 (3).
BioGrid reports that CG6203 interacts with CG7671 CG9933 CG6521 CG8854 CG3978 CG12284 CG7439 CG7439 CG7439 CG7439 CG4792 CG10279 CG7726 CG17489 CG7439 CG7726 CG17489 CG10279 CG7439 CG7726 CG17489 CG10279 Dmel CG34387 Dmel CG34387 Dmel CG34387 .
TRiP has 3 RNAi stocks for FBgn0028734 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 0.50Down
Head19 30 of 4 0.40Down
Eye12 12 of 4 0.25Down
Thoracicoabdominal ganglion24 24 of 4 0.50Down
Salivary gland19 40 of 4 0.37Down
Crop29 14 of 4 0.60Down
Midgut25 30 of 4 0.50Down
Tubule19 12 of 4 0.40Down
Hindgut18 12 of 4 0.30Down
Heart8 20 of 4 0.16Down
Fat body5 50 of 4 0.10Down
Ovary68 34 of 4 1.30Up
Testis48 24 of 4 0.90None
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca2 10 of 4 0.05Down
Mated spermatheca2 00 of 4 0.05Down
Adult carcass30 40 of 4 0.60Down
Larval CNS33 14 of 4 0.64Down
Larval Salivary gland19 10 of 4 0.38Down
Larval midgut8 20 of 4 0.17Down
Larval tubule23 24 of 4 0.50Down
Larval hindgut17 23 of 4 0.34Down
Larval fat body35 22 of 4 0.70Down
Larval trachea11 10 of 4 0.23Down
Larval carcass19 10 of 4 0.37Down
S2 cells (growing)106 44 of 4 2.02Up
Whole fly52 44 of 4



Fragile X (Fmr1):

Annotation Number : CG6203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028734
Gbrowse : chr3R:5927135-5935843 (-) // 100.0 //
Probeset : 1634028_s_at
Accessions : protein= NP_001163580; /// NP_611645; /// NP_731443; /// NP_731444; /// NP_731445; /// NP_731446;, nucleotide= NM_001170109; /// NM_137801; /// NM_169324; /// NM_169325; /// NM_169326; /// NM_169327;
Pathway : embryonic // inferred from mutant phenotype /// 0045475 // locomotor rhythm // inferred from mutant phenotype /// 00481
Interpro : sleep // inferred from mutant phenotype /// 0050807 // regulation of synapse organization // inferred from genetic inte
FlyMine data for FBgn0028734.
BDGP gene expression has embryonic in situ data for Fmr1: 4 pix of staining in 1 body parts.
Homophila reports that CG6203 is a close match (1e-68) to human gene FMR1;FRAXA (NP_002015), a gene associated with Fragile X syndrome, 300624 (3);Fragile X tremor/ataxia syndrome, 300623 (3).
BioGrid reports that CG6203 interacts with CG7671 CG9933 CG6521 CG8854 CG3978 CG12284 CG7439 CG7439 CG7439 CG7439 CG4792 CG10279 CG7726 CG17489 CG7439 CG7726 CG17489 CG10279 CG7439 CG7726 CG17489 CG10279 Dmel CG34387 Dmel CG34387 Dmel CG34387 .
TRiP has 3 RNAi stocks for FBgn0028734 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 94 of 4 4.30Up
Head75 44 of 4 1.80Up
Eye65 54 of 4 1.59Up
Thoracicoabdominal ganglion150 64 of 4 3.70Up
Salivary gland28 44 of 4 0.69Down
Crop138 34 of 4 3.40Up
Midgut45 24 of 4 1.10None
Tubule72 14 of 4 1.80Up
Hindgut89 24 of 4 2.20Up
Heart59 64 of 4 1.45None
Fat body89 14 of 4 2.18Up
Ovary46 24 of 4 1.10None
Testis19 14 of 4 0.50Down
Male accessory glands44 54 of 4 1.10None
Virgin spermatheca61 64 of 4 1.49Up
Mated spermatheca67 04 of 4 1.66Up
Adult carcass49 44 of 4 1.20None
Larval CNS521 374 of 412.77Up
Larval Salivary gland77 34 of 4 1.90Up
Larval midgut66 64 of 4 1.62Up
Larval tubule127 104 of 4 3.10Up
Larval hindgut143 04 of 4 3.52Up
Larval fat body70 64 of 4 1.70Up
Larval trachea123 134 of 4 3.01Up
Larval carcass241 154 of 4 5.91Up
S2 cells (growing)309 114 of 4 7.57Up
Whole fly40 14 of 4

Looking for FBgn0028734. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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