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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028738 through 18771 annotations produced 1 hits



ecdysis triggering hormone-2 (ETH):

Annotation Number : CG18105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028738
Gbrowse : chr2R:20682177-20682981 (-) // 100.0 //
Probeset : 1639278_at
Accessions : protein= NP_524699;, nucleotide= NM_079960;
Pathway : chitin-based cuticle // inferred from mutant phenotype"
FlyMine data for FBgn0028738.
TRiP has 1 RNAi stocks for FBgn0028738 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028738 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 1.40None
Head4 ± 10 of 4 1.10None
Eye21 ± 72 of 4 4.92None
Thoracicoabdominal ganglion2 ± 10 of 4 0.60None
Salivary gland3 ± 10 of 4 0.87None
Crop4 ± 10 of 4 1.10None
Midgut2 ± 10 of 4 0.50None
Tubule2 ± 00 of 4 0.60Down
Hindgut5 ± 10 of 4 1.20None
Heart3 ± 00 of 4 0.73None
Fat body11 ± 30 of 4 2.65Up
Ovary11 ± 00 of 4 2.60Up
Testis1 ± 00 of 4 0.20None
Male accessory glands0 ± 00 of 4 0.20None
Virgin spermatheca9 ± 41 of 4 2.23None
Mated spermatheca3 ± 10 of 4 0.89None
Adult carcass5 ± 10 of 4 1.30None
Larval CNS26 ± 14 of 4 6.24Up
Larval Salivary gland4 ± 20 of 4 0.95None
Larval midgut4 ± 20 of 4 1.15None
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut5 ± 10 of 4 1.28None
Larval fat body11 ± 30 of 4 2.60None
Larval trachea2002 ± 2134 of 4468.53Up
Larval carcass4 ± 10 of 4 1.02None
S2 cells (growing)16 ± 12 of 4 3.85Up
Whole fly4 ± 10 of 4

Looking for FBgn0028738. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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