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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028740 through 18771 annotations produced 1 hits



(CG6362):

Annotation Number : CG6362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028740
Gbrowse : chr2R:13657909-13660057 (-) // 100.0 //
Probeset : 1631203_at
Accessions : protein= NP_611268;, nucleotide= NM_137424;
FlyMine data for FBgn0028740.
VDRC has 2 RNAi stocks for FBgn0028740 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 3.30Up
Head14 ± 21 of 4 6.70Up
Eye9 ± 11 of 4 4.31Up
Thoracicoabdominal ganglion8 ± 30 of 4 4.10None
Salivary gland5 ± 10 of 4 2.48None
Crop5 ± 20 of 4 2.60None
Midgut3 ± 10 of 4 1.80None
Tubule8 ± 10 of 4 4.00Up
Hindgut4 ± 00 of 4 1.90Up
Heart7 ± 01 of 4 3.32Up
Fat body6 ± 40 of 4 2.88None
Ovary4 ± 00 of 4 2.10Up
Testis2 ± 00 of 4 1.00None
Male accessory glands8 ± 30 of 4 4.00None
Virgin spermatheca6 ± 10 of 4 3.25Up
Mated spermatheca6 ± 10 of 4 3.04None
Adult carcass4 ± 20 of 4 2.20None
Larval CNS10 ± 10 of 4 5.01Up
Larval Salivary gland15 ± 20 of 4 7.14Up
Larval midgut8 ± 20 of 4 3.74None
Larval tubule4 ± 10 of 4 2.10None
Larval hindgut5 ± 20 of 4 2.64None
Larval fat body5 ± 20 of 4 2.40None
Larval trachea11 ± 00 of 4 5.42Up
Larval carcass4 ± 10 of 4 1.96None
S2 cells (growing)6 ± 00 of 4 3.14Up
Whole fly2 ± 00 of 4

Looking for FBgn0028740. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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