Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028744 through 18771 annotations produced 1 hits



(CG5033):

Annotation Number : CG5033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028744
Gbrowse : chr2R:13677196-13679959 (+) // 100.0 //
Probeset : 1636468_a_at
Accessions : protein= NP_611270; /// NP_725721;, nucleotide= NM_137426; /// NM_166248;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from electronic annotat
Interpro : 0043021 // ribonucleoprotein binding // inferred from sequence or structural similarity
FlyMine data for FBgn0028744.
BDGP gene expression has embryonic in situ data for EG:52C10.1: 37 pix of staining in 28 body parts.
BioGrid reports that CG5033 interacts with CG5642 .
TRiP has 1 RNAi stocks for FBgn0028744 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028744 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 14 of 4 0.30Down
Head57 24 of 4 0.40Down
Eye31 34 of 4 0.22Down
Thoracicoabdominal ganglion35 14 of 4 0.20Down
Salivary gland93 34 of 4 0.65Down
Crop68 54 of 4 0.50Down
Midgut81 34 of 4 0.60Down
Tubule106 174 of 4 0.70Down
Hindgut61 14 of 4 0.40Down
Heart45 24 of 4 0.31Down
Fat body89 114 of 4 0.62Down
Ovary306 44 of 4 2.10Up
Testis26 34 of 4 0.20Down
Male accessory glands167 104 of 4 1.20None
Virgin spermatheca76 54 of 4 0.53Down
Mated spermatheca98 14 of 4 0.68Down
Adult carcass57 54 of 4 0.40Down
Larval CNS189 54 of 4 1.31Up
Larval Salivary gland145 94 of 4 1.01None
Larval midgut59 44 of 4 0.41Down
Larval tubule31 04 of 4 0.20Down
Larval hindgut92 114 of 4 0.64Down
Larval fat body29 44 of 4 0.20Down
Larval trachea142 194 of 4 0.99None
Larval carcass123 294 of 4 0.86None
S2 cells (growing)231 54 of 4 1.60Up
Whole fly144 94 of 4

Looking for FBgn0028744. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime