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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028746 through 18771 annotations produced 1 hits


Annotation Number : CG18508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028746
Gbrowse : chrX:3066486-3067155 (-) // 99.03 //
Probeset : 1625345_at
Accessions : protein= NP_652721;, nucleotide= NM_144464;
FlyMine data for FBgn0028746.
BDGP gene expression has embryonic in situ data for EG:140G11.3: 4 pix of staining in 1 body parts.
VDRC has 6 RNAi stocks for FBgn0028746 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain326 74 of 4 2.10Up
Head211 94 of 4 1.40Up
Eye174 74 of 4 1.14None
Thoracicoabdominal ganglion279 54 of 4 1.80Up
Salivary gland686 284 of 4 4.50Up
Crop308 44 of 4 2.00Up
Midgut204 64 of 4 1.30Up
Tubule102 114 of 4 0.70Down
Hindgut300 34 of 4 2.00Up
Heart352 134 of 4 2.31Up
Fat body338 384 of 4 2.22Up
Ovary171 44 of 4 1.10None
Testis358 164 of 4 2.30Up
Male accessory glands149 134 of 4 1.00None
Virgin spermatheca92 44 of 4 0.60Down
Mated spermatheca101 44 of 4 0.67Down
Adult carcass222 134 of 4 1.50Up
Larval CNS116 54 of 4 0.76Down
Larval Salivary gland238 124 of 4 1.56Up
Larval midgut149 54 of 4 0.98None
Larval tubule227 74 of 4 1.50Up
Larval hindgut143 64 of 4 0.94None
Larval fat body201 74 of 4 1.30Up
Larval trachea94 54 of 4 0.62Down
Larval carcass99 54 of 4 0.65Down
S2 cells (growing)116 44 of 4 0.76Down
Whole fly152 104 of 4

Looking for FBgn0028746. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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