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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028789 through 18771 annotations produced 1 hits

Dorsocross (Doc1):

Annotation Number : CG5133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028789
Gbrowse : chr3L:9034476-9038144 (+) // 100.0 //
Probeset : 1631218_at
Accessions : protein= NP_648283;, nucleotide= NM_140026;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007507 // heart development // traceable author statement ///
FlyMine data for FBgn0028789.
BDGP gene expression has embryonic in situ data for Doc1: 44 pix of staining in 37 body parts.
Homophila reports that CG5133 is a close match (8e-31) to human gene CPX;TBX22 (NP_001103349), a gene associated with Cleft palate with ankyloglossia, 303400 (3).
TRiP has 1 RNAi stocks for FBgn0028789 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028789 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 0.20Down
Head11 04 of 4 0.60Down
Eye4 12 of 4 0.24Down
Thoracicoabdominal ganglion6 11 of 4 0.40Down
Salivary gland21 30 of 4 1.14None
Crop10 32 of 4 0.60None
Midgut11 12 of 4 0.60Down
Tubule119 672 of 4 6.20None
Hindgut164 24 of 4 8.60Up
Heart8 13 of 4 0.43Down
Fat body11 62 of 4 0.60None
Ovary6 03 of 4 0.30Down
Testis141 54 of 4 7.40Up
Male accessory glands13 20 of 4 0.70None
Virgin spermatheca7 12 of 4 0.38Down
Mated spermatheca8 13 of 4 0.45Down
Adult carcass18 33 of 4 0.90None
Larval CNS21 14 of 4 1.10None
Larval Salivary gland12 04 of 4 0.64Down
Larval midgut11 13 of 4 0.57Down
Larval tubule252 84 of 413.10Up
Larval hindgut371 204 of 419.27Up
Larval fat body42 134 of 4 2.20None
Larval trachea9 33 of 4 0.51Down
Larval carcass49 44 of 4 2.59Up
S2 cells (growing)6 01 of 4 0.32Down
Whole fly19 14 of 4

Looking for FBgn0028789. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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